Plant FIBer expression Database

Potri.005G091600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08280 543 / 0 HEMC hydroxymethylbilane synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G072500
[exp]
687 / 0 AT5G08280 557 / 0.0 hydroxymethylbilane synthase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013439
[exp]
594 / 0 AT5G08280 543 / 0.0 hydroxymethylbilane synthase (.1)
Lus10040987
[exp]
568 / 0 AT5G08280 519 / 0.0 hydroxymethylbilane synthase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0177 PBP PF01379 Porphobil_deam Porphobilinogen deaminase, dipyromethane cofactor binding domain
CL0177 PF03900 Porphobil_deamC Porphobilinogen deaminase, C-terminal domain
Representative CDS sequence
>Potri.005G091600.3 pacid=42803677 polypeptide=Potri.005G091600.3.p locus=Potri.005G091600 ID=Potri.005G091600.3.v4.1 annot-version=v4.1
ATGGGGACTCCATCTTCTCTTTGTACAAGTCAAGCTCTAATGTCCCGTCCATCAAGGCCAGCCATTTTTTGCACTAGCGGGTCTGTTTCCTTCACTGGGT
TTTCTCTAAAGACTCAAGCTTTTTTTAGAAAGAAACAGACTTTGAGGTTTGTGAAGGCTTCTGTTGCTGTTGAACAGCAAGCCCAGGAAGCTAAACTTGC
TCTCATTAGAATTGGCACCAGAGGAAGCCCACTTGCACTTGCTCAAGCTCATGAGACACGGGACAAACTCATGGCTTCACATGCGGAGCTAGCTGAAGAT
GGAGCTATCCAAATTGTGATAATAAAGACAACGGGAGATAAGATACTAAGTCAACCACTTGCAGACATAGGTGGAAAGGGACTGTTCACAAAAGAAATAG
ATGAGGCACTGATAAATGGTGACATTGACATTGCTGTCCACTCAATGAAAGATGTTCCTACATATTTACCAGAGATGACCATCCTCCCCTGTAACCTTCC
TCGTGAGGATGTTAGAGATGCATTTATTTCAATGAGTGCAACTTCGCTAGCAGATCTTCCTGCTGGTAGCATCGTTGGTACTGCTTCCCTCAGAAGAAAG
TCACAAATACTCCATAGATTTCCATCGCTCAGTGTGGAAGAAAATTTTAGGGGCAATGTTCAGACAAGGCTGAGAAAACTTAATGAAGGAGTTGTAAAGG
CAACACTATTGGCATTAGCTGGACTTAAACGCCTAAATATGACGGAAAATGTAACTTCCATTCTTCCAATCGATGACATGCTTCCCGCAGTTGCCCAAGG
TGCAATTGGAATTGCCTGTCGAGACAGTGATGACAAAATGGCTAATTATTTGGCTTCGTTGAACCACGAGGAAACAAGACTAGCAGTTGCATGTGAGAGG
GCCTTTCTTGAGACCTTAGATGGGTCCTGCCGCACTCCTATTGCTGGATATGCTAGAAGAGATGAAAATGGTGATTGCATATTTAAAGGGTTGGTTGCTT
CTCCTGATGGAACTCGCGTACTCAAGACTTCTAGAAAGGGTCCGTATGCTTTCGATGATATGATTGCAATGGGAAAGGATGCTGGAAAGGAACTTCTTTC
ACAGGCAGGTCCTGGATTCTTTGACCGATGA
AA sequence
>Potri.005G091600.3 pacid=42803677 polypeptide=Potri.005G091600.3.p locus=Potri.005G091600 ID=Potri.005G091600.3.v4.1 annot-version=v4.1
MGTPSSLCTSQALMSRPSRPAIFCTSGSVSFTGFSLKTQAFFRKKQTLRFVKASVAVEQQAQEAKLALIRIGTRGSPLALAQAHETRDKLMASHAELAED
GAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEMTILPCNLPREDVRDAFISMSATSLADLPAGSIVGTASLRRK
SQILHRFPSLSVEENFRGNVQTRLRKLNEGVVKATLLALAGLKRLNMTENVTSILPIDDMLPAVAQGAIGIACRDSDDKMANYLASLNHEETRLAVACER
AFLETLDGSCRTPIAGYARRDENGDCIFKGLVASPDGTRVLKTSRKGPYAFDDMIAMGKDAGKELLSQAGPGFFDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08280 HEMC hydroxymethylbilane synthase (... Potri.005G091600
[exp]
0 1
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Potri.001G351400
[exp]
1.73 0.9594
AT1G08520 V157, ALB1, ALB... PIGMENT DEFECTIVE EMBRYO 166, ... Potri.009G049400
[exp]
2.44 0.9419 CHLD.1
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Potri.004G177400
[exp]
3.60 0.9173
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Potri.017G072800
[exp]
3.74 0.9433
Potri.017G095500
[exp]
5.29 0.9036
AT4G00730 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS... Potri.002G154700
[exp]
5.47 0.9309 Pt-ANL2.1
AT4G23290 CRK21 cysteine-rich RLK (RECEPTOR-li... Potri.018G111751
[exp]
7.00 0.9253
AT4G34090 unknown protein Potri.009G099600
[exp]
9.00 0.9232
AT1G19800 ABCI14, TGD1 ATP-binding cassette I14, trig... Potri.002G234400
[exp]
14.07 0.9083
AT2G40490 HEME2 Uroporphyrinogen decarboxylase... Potri.019G048900
[exp]
14.89 0.9302

Potri.005G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.