Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 652 / 0 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 522 / 0 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 479 / 9e-167 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G61130 476 / 1e-165 SCPL32 serine carboxypeptidase-like 32 (.1) AT4G15100 476 / 1e-165 SCPL30 serine carboxypeptidase-like 30 (.1) AT2G24000 473 / 2e-164 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT1G11080 473 / 5e-164 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT3G02110 468 / 3e-162 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35780 461 / 4e-160 SCPL26 serine carboxypeptidase-like 26 (.1) AT2G24010 451 / 3e-156 SCPL23 serine carboxypeptidase-like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091800 [exp] 588 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 543 / 0 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.006G183200 [exp] 484 / 7e-169 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 477 / 3e-166 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.008G041800 [exp] 472 / 3e-164 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 467 / 3e-162 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.004G120100 [exp] 465 / 2e-161 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 462 / 2e-160 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.011G046600 [exp] 461 / 1e-159 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017391 [exp] 691 / 0 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 689 / 0 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010191 [exp] 501 / 4e-175 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 497 / 1e-173 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10023505 [exp] 464 / 3e-161 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10019954 [exp] 464 / 2e-160 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10040387 [exp] 462 / 2e-160 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10011213 [exp] 462 / 7e-160 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10015489 [exp] 458 / 3e-158 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10018467 [exp] 455 / 4e-157 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.005G091700.1 pacid=42802527 polypeptide=Potri.005G091700.1.p locus=Potri.005G091700 ID=Potri.005G091700.1.v4.1 annot-version=v4.1 ATGCAGTCTGTAACAATGGCTTTATACTCGTTCTCTTTGCATCTTTTTCTTCTTCTTTTCTTCATACTTAGCTCAGCTAGAGCGAGTGAGGCTGACTTTG AGCTTACTCAAGATGTGTTAGCCCGACAAGAAGCAGACAGAGTCATTAGACTTCCTGGCCAGCCTGAGGTAACGTTCAAGCAGTATGCAGGCTATGTAAC AGTCAATGAAAGTCATGGGAGAGCTTTGTTTTATTGGTTCTTTGAAGCCATTGAGAATCCTGAAGAGAAACCTTTGCTTCTGTGGCTCAATGGAGGGCCA GGGTGCTCGTCCATTGGCTATGGAGAGGCAGAGGAGTTAGGTCCTTTCTTTCCTAAGATCGGTGGACAAGAGCTACAGTTCAATCCTCACACATGGAATA ATGTGGCCAATCTGTTGTTTCTGGAATCTCCTGTTGGGGTTGGATTTTCCTACTCCAATACCACCAGTGATCTTAAAGAGCTTGGTGACACAGTTACAGC TCAAGATTCATACATATTTCTTGTGAGATGGTTCCAAAGATTCCCGCAGTTCAAGTCCCATGAGTTCTACATTTCTGGAGAGAGCTATGCAGGGCACTAT GTTCCACAGCTTGCCGAGGTCATCTATGACGGCAACAAGAAAGTTTCCGAGAAAGATCACATAAACTTAAAGGGCTTTATTATAGGCAATGCATTATTGG ATGATGAAACAGATCAAAAGGGGATGATAGATTATGCGTGGGATCATGCTGTAATATCCGACCGTCTGTACCATGATGTTAAGAAAAAATGCAATTTCAG TGAGAAGAATCCATCCCATGATTGCAAAAATGCCCTCCATCAGTACTTTAGTGTCTATAGAATTATTGACATGTACAGCTTATACAGTCCCAGATGCATC AACAGTAACTTCAGCGATGCAAGAGACAGACCGGTTATTCATGGCAATATGGCTCCTCAATTGTTATCCAAATTTGCAGACTGGCACAAGAGACCTGCTG GCTATGACCCTTGTGCCTCAGACTACACTGAGATTTATATGAATAGGCCAGCCGTTCAAGCAGCACTCCATGCTAATGTAACCAAAATTCCCTATCCATG GACTCACTGCAGTGAAGATATCACATTTTGGAGTGATGCACCACAATCAATTCTTCCCATAATCAAGAAACTTATTGCTGGGGGAATTCGCATATGGGTC TACAGTGGAGATACCGATGGTAGAATTCCTGTGACTGCAACTAGATACACGTTAAACAAGCTAGGATTGAACACTATTGAAGAATGGACTCCATGGTACC ATGGAAAACAGGTTGCTGGGTGGACAATTGTGTACGATGGGCTAACTTTTGTCACGATAAGAGGGGCTGGCCACCAAGTACCAACGTTTAAGCCCAAACA GTCTCTTACCTTCATTAAGCGCTTCTTGGAAAATAAGAAATTGTCGTCTGAAGCATTTTAG
AA sequence Show only first row Show all	>Potri.005G091700.1 pacid=42802527 polypeptide=Potri.005G091700.1.p locus=Potri.005G091700 ID=Potri.005G091700.1.v4.1 annot-version=v4.1 MQSVTMALYSFSLHLFLLLFFILSSARASEADFELTQDVLARQEADRVIRLPGQPEVTFKQYAGYVTVNESHGRALFYWFFEAIENPEEKPLLLWLNGGP GCSSIGYGEAEELGPFFPKIGGQELQFNPHTWNNVANLLFLESPVGVGFSYSNTTSDLKELGDTVTAQDSYIFLVRWFQRFPQFKSHEFYISGESYAGHY VPQLAEVIYDGNKKVSEKDHINLKGFIIGNALLDDETDQKGMIDYAWDHAVISDRLYHDVKKKCNFSEKNPSHDCKNALHQYFSVYRIIDMYSLYSPRCI NSNFSDARDRPVIHGNMAPQLLSKFADWHKRPAGYDPCASDYTEIYMNRPAVQAALHANVTKIPYPWTHCSEDITFWSDAPQSILPIIKKLIAGGIRIWV YSGDTDGRIPVTATRYTLNKLGLNTIEEWTPWYHGKQVAGWTIVYDGLTFVTIRGAGHQVPTFKPKQSLTFIKRFLENKKLSSEAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Potri.005G091700 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G029000 [exp]	4.58	0.9883
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G008666 [exp]	6.16	0.9850
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	6.32	0.9838
AT1G30700			FAD-binding Berberine family p...		Potri.001G462532 [exp]	8.06	0.9831
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080333 [exp]	9.00	0.9846
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G020700 [exp]	14.89	0.9826
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.005G122600 [exp]	20.78	0.9797
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.001G234500 [exp]	23.57	0.9031
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.006G243700 [exp]	25.09	0.9823	Pt-RD22.1
AT4G39830			Cupredoxin superfamily protein...		Potri.001G454700 [exp]	26.49	0.9810

Compare expression of checked genes

Potri.005G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.