Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23210 585 / 0 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G08260 509 / 9e-179 SCPL35 serine carboxypeptidase-like 35 (.1) AT4G30610 460 / 8e-160 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 443 / 5e-153 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT3G17180 436 / 4e-150 SCPL33 serine carboxypeptidase-like 33 (.1) AT3G02110 435 / 1e-149 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G61130 434 / 2e-149 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G24010 431 / 1e-148 SCPL23 serine carboxypeptidase-like 23 (.1) AT1G11080 432 / 2e-148 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT3G63470 428 / 1e-146 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091700 [exp] 586 / 0 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.007G072300 [exp] 532 / 0 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.018G105700 [exp] 462 / 1e-160 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 459 / 2e-159 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G261100 [exp] 445 / 3e-153 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.011G046600 [exp] 443 / 1e-152 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.008G041700 [exp] 441 / 4e-152 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.008G041800 [exp] 439 / 1e-151 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.009G055900 [exp] 439 / 5e-151 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010190 [exp] 570 / 0 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 564 / 0 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010191 [exp] 536 / 0 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 533 / 0 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10015489 [exp] 445 / 2e-153 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 440 / 3e-151 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10011213 [exp] 438 / 9e-151 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10037810 [exp] 434 / 6e-149 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10018467 [exp] 432 / 2e-148 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10023505 [exp] 427 / 1e-146 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.005G091800.1 pacid=42805332 polypeptide=Potri.005G091800.1.p locus=Potri.005G091800 ID=Potri.005G091800.1.v4.1 annot-version=v4.1 ATGGGACTTTCAGCTTTTGTATTGCGTCTTTTTCTATGCAGTTTTGCATTGTTCTTGAGTGCCTCTTCATGGGAACTTGACGATAAGATCAAGGCACTTC AAGATGCTGACCGTATTCTAGGACTTCCTGGCCAACCTCCGGTGAAGTTCCGGCAATATTCTGGATATGTTACAGTTGATGAAACTTATGGGAAGGCACT TTTCTATTGGTTCTTTGAAGCAACATATCAGCCTGAAAAGAAACCTCTTCTTCTGTGGCTCAATGGAGGTCCTGGATGCTCATCTGTTGGGTTTGGTGAA GCTCAAGAGCTTGGCCCATTTTTGGTGAAGGAAGGCCCATCAATAGTATTCAATAATTACACGTGGAATAAAGCTGCAAATTTATTATTCTTGGATTCTC CGGCCGGCGTTGGATTTTCGTATTCTAATACAAGTCTTGATGTTCAAGGAGATAGCATGACGGCCTTGGATGCGCACACATTTCTCCTAAACTGGTTCAA GAGATTTCCACAATACAAGTCCAGTGAATTCTACATAGCAGGAGAAAGCTATGCAGGCCATTTTGTACCACAACTTGCTGAGGTTATCTTCGATGAGAAC AAGAATTCCACAGAGGACACTTACATAAATCTTAAGGGTTTCATGATTGGAAATGCAATATTGGATGATGAAACTGATCAGAAAGGAATGGTAGATTATG CATGGGATCATGCAATAATCTCAGATGGGGTGTACAATTCAATCAAGAAAAACTGTGATTTTATCACAAATCTGACTGAAGAATGCTGGGATTCATTATT GAAGTACTATAATGTCTACAAAATCATCAATGTGTATAGCTTGTATTCTCCAACTTGTCCTCTGGATCAACCCTTTGCCAAGTCTACAAAAATGTTTGCA GTCCCAAAATCCCTGAAAACAATCGATATTCTGCGCAGAATTCCAGCAGGATATGATCCATGTTCCATGAATCATGCAACAGATTATTTCAATCTTCCAG ACGTTCAGGCAGCACTTCATGCTAATGTAACCAACATACCAGGACCATATGTCCTTTGCAATAATGATGTGAACAGTGCCTGGCAAGACTCGGCCACTTC AATCTTACCAGTAATTAAGAAGCTCATCAATGGGGGCATTCGCGTATGGGTCTTCAGTGGAGACACAGATGGTAGAGTTCCAGTGACCTCAACCAGGTAT ACCTTAAATAAGCTTGGACTAAACATTACTGAAGATTGGACTCCATGGTATAATCACAGAGAGGTTGGAGGCTGGACAATTACCTATGATGGGTTGACAT TCATAACAGTGAGAGGAGCAGGTCACCAAGTTCCTACATATGCTCCAAAGCGTGCTCTTCAACTCGTCAGACACTTCCTAGCCAACAAGAAACTCCCATC TGTTGCTTTTTAA
AA sequence Show only first row Show all	>Potri.005G091800.1 pacid=42805332 polypeptide=Potri.005G091800.1.p locus=Potri.005G091800 ID=Potri.005G091800.1.v4.1 annot-version=v4.1 MGLSAFVLRLFLCSFALFLSASSWELDDKIKALQDADRILGLPGQPPVKFRQYSGYVTVDETYGKALFYWFFEATYQPEKKPLLLWLNGGPGCSSVGFGE AQELGPFLVKEGPSIVFNNYTWNKAANLLFLDSPAGVGFSYSNTSLDVQGDSMTALDAHTFLLNWFKRFPQYKSSEFYIAGESYAGHFVPQLAEVIFDEN KNSTEDTYINLKGFMIGNAILDDETDQKGMVDYAWDHAIISDGVYNSIKKNCDFITNLTEECWDSLLKYYNVYKIINVYSLYSPTCPLDQPFAKSTKMFA VPKSLKTIDILRRIPAGYDPCSMNHATDYFNLPDVQAALHANVTNIPGPYVLCNNDVNSAWQDSATSILPVIKKLINGGIRVWVFSGDTDGRVPVTSTRY TLNKLGLNITEDWTPWYNHREVGGWTITYDGLTFITVRGAGHQVPTYAPKRALQLVRHFLANKKLPSVAF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Potri.005G091800 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.013G126100 [exp]	1.73	0.9990
					Potri.003G126400 [exp]	3.74	0.9988
					Potri.018G047201 [exp]	5.47	0.9975
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213446 [exp]	6.00	0.9987
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212923 [exp]	6.32	0.9986
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.005G254300 [exp]	6.63	0.9975
					Potri.014G081900 [exp]	7.41	0.9984
					Potri.001G307100 [exp]	8.48	0.9982
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213669 [exp]	9.16	0.9981
AT1G02335		GL22	germin-like protein subfamily ...		Potri.010G240700 [exp]	10.39	0.9976	Pt-GER2.16

Compare expression of checked genes

Potri.005G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.