Plant FIBer expression Database

Potri.005G091901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G091901.1 pacid=42802408 polypeptide=Potri.005G091901.1.p locus=Potri.005G091901 ID=Potri.005G091901.1.v4.1 annot-version=v4.1
ATGCATGGTGTTGTTTTTACTGATAAAAATTTTCAACCGCATACTGGTGGCCAAATTAAAAGGCATATGCCGCTGCAACAACCTACGTCGCCGATTAAGC
ATGGAGATGTACCTGGAGGGAGGCACTTGTCTGCCGATTTAGGCATCATCACATTTGAGAGGGGAATGTTCTTGGTATTACTAGTAGTGATCTCATCAAC
GCCATCAGAGGTGAGTGGGATTTCCCTCATAGAGAAAGCACAAGGAGAAATAGTCGCCATGAAGAGTAAGGACACTATCAGAAACAAACTCACTTTCTTG
CTATCCATCTCCCTCACACTCGCAGACAAACACCAACCTTTTAATTCACTTGTAAAGTAA
AA sequence
>Potri.005G091901.1 pacid=42802408 polypeptide=Potri.005G091901.1.p locus=Potri.005G091901 ID=Potri.005G091901.1.v4.1 annot-version=v4.1
MHGVVFTDKNFQPHTGGQIKRHMPLQQPTSPIKHGDVPGGRHLSADLGIITFERGMFLVLLVVISSTPSEVSGISLIEKAQGEIVAMKSKDTIRNKLTFL
LSISLTLADKHQPFNSLVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G091901
[exp]
0 1
Potri.004G067750
[exp]
4.00 0.8031
AT2G41380 S-adenosyl-L-methionine-depend... Potri.016G039051
[exp]
4.24 0.8372
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Potri.013G041600
[exp]
4.47 0.8426 Pt-PR4.1
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Potri.011G020900
[exp]
5.91 0.7797 ACO7,Pt-ACO1.3
AT1G65790 ARK1 receptor kinase 1 (.1) Potri.004G024316
[exp]
8.48 0.7776
AT4G36600 Late embryogenesis abundant (L... Potri.005G122400
[exp]
11.83 0.7377
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063500
[exp]
14.07 0.7421 RKF1.1
Potri.001G013101
[exp]
17.88 0.7055
AT3G14130 Aldolase-type TIM barrel famil... Potri.003G069300
[exp]
19.59 0.7343
Potri.012G129400
[exp]
21.81 0.6719

Potri.005G091901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.