Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23150 478 / 2e-144 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 399 / 6e-116 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 206 / 3e-53 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 192 / 3e-49 Tudor/PWWP/MBT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071600 [exp] 1820 / 0 AT5G23150 485 / 1e-146 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.014G138700 [exp] 220 / 1e-57 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 47 / 0.0001 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013433 [exp] 842 / 0 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 822 / 0 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 773 / 0 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 768 / 0 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 189 / 2e-48 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10042690 [exp] 137 / 6e-18 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain CL0020 [poplar] [flax] TPR PF12243 [poplar] [flax] CTK3 CTD kinase subunit gamma CTK3
Representative CDS sequence Show only first row Show all	>Potri.005G092700.1 pacid=42803001 polypeptide=Potri.005G092700.1.p locus=Potri.005G092700 ID=Potri.005G092700.1.v4.1 annot-version=v4.1 ATGGCTCCGGGGCGTAAAAAGGGAGCGAATAATAAGAAAGTTCAGTTGCGTTTGGGTGATCTTGTGCTTGCTAAAGTCAAGGGTTACCCTTCTTGGCCTG CGAAGATTAGTCGGCCTGAAGATTGGAAACGAGCCCCTGATGCTAAGAAAGTTTTTGTCTATTTCTTTGGAACTCAAGAAATTGCTTTTGTTGCCCCTTC TGATATTCAGGTATTCACAAATGAAGTAAAGAATAAACTGTCGGCTCGGTGCCAGAGTAAGAAAGATAAGTTCTTTTCCCAAGCTGTGAAGGAAATCTGT GCAGCTTTTGAAGAGTTGCAGAAGGGAAAGTCAAGTGGATTGGGAGATACTACTGATAGATCAGCACCAGGATCTGAGGCTCCATCTGTTGACTCAATGG AAGAGGATGAGGCAGAGGATGACTTAAATGAGGACATGGGTAAAGTTGGACAAAGTGGAGAAGTGTGGAATTTAAGACGTGAATATAGTTCTAAGTTAGA GCGTTGCTCCAGTAGACGAGATGAAGCTGGCTCCGAAGATATGAAGCCTTCCGTATCAGGTGACGCAGATGACAGTTCATCCCCAGGTATATCTTCTGAA AAGAAGGTTAAAATGTTTGATAGTGCACAACCACAAGAAGTATTATCTGCTTCCAGTTTGGATAATGTTTGCTGTGTAAAAGTTGAAGCCTCTTGTAATG GAAATCTGGATCTTAATTGCAATAAGAACCTGGGTACTGGTGAGGGGGCGTGGACAAATCCCCATGAGTCTAAGACAGTGTTTTCTGGGGCTGAGAGAAA ATTGGAATGTAACTCCAGGGAACAAGTTATAGGCGGAGAAAAAGGCAAGCTTGCTAGTGGCAGTATAAAAGATCCCCCCCCAGGCCCTCCTAAATCAGAA TTAGATGCCAACGGTGGTAGAAAAGTAAAAGAACTATCAAAAGTCAAGAAGGGTACTATGGTGTCTGATGAAAAACATGAAAATAAGGTTTTTCAAAAGA AAAGGCGTGCCCAACCTGATCATGGAAAATCTGAGCTTGAAGCAACTGAAAATGCAAATCCTGCTAAGAAATCAAAGCGTGTAGATGTGGCAGATGATAT TACAAAGGGACCTTTCTCAGAAAACATGAGTGTTTCACCAAGCTCAAATGTTGTTGATGACCAAGCAGCCAAACGGTCCATGGCACATGGAAAAAGGGAG ATCCTTTTGGGATTAAGAGCCCGAAGCGACAAAGCTAAATCAGATGCTTTTGCCCAAACTAGTAAAGTTAAATCTAATCTTTCTTCTCAATCAGGTAAGG TCAAATCTGGTACATCTGCCAAGATGAGTAAAGTTGATAGTGATGCATCTGCCCAAACAGTTAAAGTCAAAAGTGATGCTTCTGCACAATGGGGTAACAC TAATACTGATGTATCTGTTCAAATAAGTAAAGTCAAACTTGATTCAACTGCTGAAATTGGCAAAGCTAAACCTGATGTTCCTGATCCAACGAGTAAAGCT AAATCTGATGTTTCAAATGATGAAGCTGTGCTGCCTGTATTAAAACGTCGTAGACGGGCAATGGAGGCGATGTGTGATGCTGCTGCTCTCAATTCTGATG ACAGAATGGAGAAAAATGCTCTCGAGCTAAAGAGTGATATGGTTTCTATTAATGCGAGGGTTTCCATTACCCAACAGCCCAAAAGGCGAAGAGCTGTTTG CCTTTATGACAATGATGATGAAGATGAGGAACCCAAAACTCCTGTTCATGGAGGGGCTGCCAAAAATGGCAGAGAACCTGTTTCTGTTTCTGATGCTTCC AAGAGAACTAATGCACGAATTGAAAGTTCTGTTAATCAACAACAACGAAACTCTATTAACGCTCAGACAAGTATCAAGGATTCTACTGGTTTAGAGAATA TCCATTCCAAGGAATCATCTTCGCTGTTACAGAACAATCCTCGTTCGCCCAGCTATCCAAAAACTGTGAAGAGGAATGATACACATATCTCTCCAAGTCC TGGCAAATCAGAGCCTGAGCAGTTACTGTCAAAGGAGGCAAAACCAATCACAACTACCCCTAAGAGGTCTCCTCATCTGCTTTCTGCCACCAAACCAATT GTGGAACAGCATAAAGCTATCAACCCTGCAGTTAAAGTTTCCACTCCTGGCACTCAAAAAAAGGCCCAGGCTGGACCTGGCAAGGTTTCAGGTCCTGTTT TGGATAGTTCAAACGCTTCTCAAAATCTTGCGCCAAGTCAAAAAAGTAGAGCAGCTTTTTCTGGGGAAAGGCCAAAAAGTACTCCTAAAGCAACTTCACA AATGAGTAACCTGACTGTTCCAATGGGTGCTTTATCAGAACTGGAAGTTGGTATGGATGACAGACCCAGCTTTTTGGTCGATTCTAAGACTCCAGATTCT GTTACATCTATGAAACATCTCATTGCTGCTGCTCAAGAAAAAAGGAGACAGGCTCACTTGCAATCCTTTCCTCTTGGAAACCCTGCCTTTATAGCTCTCA ACAACGCTCAGGGAAGGAGCCCCAGCTCCTCACCAAGCCAACTTCTTTTGTCTGGTACTAGCAATGCTGCACAGGCAGATATGCAGGGCTTTTATCATCG CACAGATTTAGTTTCTCCATCTACACATGGTCGCCAATCAGCATCACATGACCAAGTGGAAGGTGAAGAAATCGAGGAGCGGAGAGTTAGTTCTGGACAC AGGGCTGCTGGAGGTTCACTGAGTGGTGGCACTGAGGCTGCTGTGGCCCGCGATGCTTTTGAAGGGATGATAGAGACTTTATCAAGGACGAAAGAAAGTA TTGGACGTGCAACTCGCCTTGCCATTGATTGTGCCAAGTATGGCATTGCAAATGAGGTTGTGGAGCTTTTAATCCGAAAATTGGAAAGTGAGCCCAGTTT CCACCGCAAAGTGGACATATTTTTTCTTGTGGACTCCATCACCCAGTGTTCACATAATCAAAAAGGTATTGCTGGAGCTTCGTATGTCCCTACAGTGCAA GCAGCATTACCACGCCTTCTCGGCGCTGCTGCTCCAGCAGGAGCTAGTGCTCGGGAAAATCGTCGTCAGTGTTTAAAGGTCTTAAGATTGTGGCTTGAGA GAAAAATCTTGCCTGAATCTGTTTTGAGGCGCTATATGGATGATATTGGAGGTTCAAATGATGATACCTCTTCTGGATTTTCCCTCAGACGTCCATCCCG AGCTGAACGAGCTATAGATGATCCAATCAGGGAAATGGAAGGCATGCTTGTTGATGAATATGGAAGTAATGCTACATTTCAGTTGCCCGGCTTTTTATCT TCTCATGTGTTCGAGGATGATGACGAGGACTTCCCTAGCAGCCCATTTAAGGAAGGTGATGGTGCGTTGGGAGTGACAGGATCAATCCATGCTTTAGGAG ATTTAGAAATAAGTACTGCTACTCCAAGTGACAGGCGACATTGCATCTTAGAGGATGTGGATGTGGAACTTGAAATGGAAGATGTGTCTGGACACCAAAA GGATGAAAGACCTTCATCCACAGGTGGTTCTTTTGAAATGGAACCACAGCAGCATTGCTCAGATGGGCCAGAACCTGCATTAAATGATTCTGCTGAGTTG CTGCCTCAACCAGATGATTCTCCACCACCGCCTCTTGATTCTCCTCCTCCACCCCCGCCTTTGCCTACCTCTCCACCGCCACCACTACCTCTATCACCTC CACCCTCAACATCTCCATCACCTCCACCTCCACCGCCGCTTCCACCTCCACCTCCACCTCTTCCGTCGCAACCACCACCTCTTCCGTCGCAACCACCACC TCCTCTTCCTCCTGTGCCAACTATGGTACTGCAACCACCTGTACCAACTCAACCTTTGTTACCAGCCAAACCAATACAACCATCTCATTCATCCGTACAG CCCTCCCCTCAGTTGGCATATCAACAAGCTGTACCTCATGAATACTGCACTACACCCAATAGTAATCAAATTGTCCAAATGGCTGGCGGTACTCCTCATG GGAATCACATGTTTTTAAACCCTCAAGCTCCTCAACAAAATCCACATTTTCAGCCGGTTAATGCACCTTTTCCACAAAGACCACTGCATCCAAACCTGGC ACAAACTGCATCTGGTCATTTCTCATTTACAAAGCCTCTAATTCAGCAGCATCCTCAGCATCCTTATCCCCGTCCATACCCTATGCTATCACATCCTGAT GGACGGCCACGATTTGCTACTGATGAACAGTGGAGGATGCCTTCAAGCGAATATGCAGATGGTCAGCATGGTGCATGGATGAGTGGAAGAAATCCATCAC ACGCAGGGCCTTCTTTTGGCCAGGAAGGTTACTTTCGGCCACCGCCTCCAAATAATATGGGATTTCAGGTTGCTCCCACCAATAATTTACCTGCTGGAGC TCCCATTCCAGGTCATGGTGTTTCACAGATGTTGCCATGTAGACCAGACATGCCTTCCCTTAACTGCTGGAGGCCAGCTCAATAA
AA sequence Show only first row Show all	>Potri.005G092700.1 pacid=42803001 polypeptide=Potri.005G092700.1.p locus=Potri.005G092700 ID=Potri.005G092700.1.v4.1 annot-version=v4.1 MAPGRKKGANNKKVQLRLGDLVLAKVKGYPSWPAKISRPEDWKRAPDAKKVFVYFFGTQEIAFVAPSDIQVFTNEVKNKLSARCQSKKDKFFSQAVKEIC AAFEELQKGKSSGLGDTTDRSAPGSEAPSVDSMEEDEAEDDLNEDMGKVGQSGEVWNLRREYSSKLERCSSRRDEAGSEDMKPSVSGDADDSSSPGISSE KKVKMFDSAQPQEVLSASSLDNVCCVKVEASCNGNLDLNCNKNLGTGEGAWTNPHESKTVFSGAERKLECNSREQVIGGEKGKLASGSIKDPPPGPPKSE LDANGGRKVKELSKVKKGTMVSDEKHENKVFQKKRRAQPDHGKSELEATENANPAKKSKRVDVADDITKGPFSENMSVSPSSNVVDDQAAKRSMAHGKRE ILLGLRARSDKAKSDAFAQTSKVKSNLSSQSGKVKSGTSAKMSKVDSDASAQTVKVKSDASAQWGNTNTDVSVQISKVKLDSTAEIGKAKPDVPDPTSKA KSDVSNDEAVLPVLKRRRRAMEAMCDAAALNSDDRMEKNALELKSDMVSINARVSITQQPKRRRAVCLYDNDDEDEEPKTPVHGGAAKNGREPVSVSDAS KRTNARIESSVNQQQRNSINAQTSIKDSTGLENIHSKESSSLLQNNPRSPSYPKTVKRNDTHISPSPGKSEPEQLLSKEAKPITTTPKRSPHLLSATKPI VEQHKAINPAVKVSTPGTQKKAQAGPGKVSGPVLDSSNASQNLAPSQKSRAAFSGERPKSTPKATSQMSNLTVPMGALSELEVGMDDRPSFLVDSKTPDS VTSMKHLIAAAQEKRRQAHLQSFPLGNPAFIALNNAQGRSPSSSPSQLLLSGTSNAAQADMQGFYHRTDLVSPSTHGRQSASHDQVEGEEIEERRVSSGH RAAGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLESEPSFHRKVDIFFLVDSITQCSHNQKGIAGASYVPTVQ AALPRLLGAAAPAGASARENRRQCLKVLRLWLERKILPESVLRRYMDDIGGSNDDTSSGFSLRRPSRAERAIDDPIREMEGMLVDEYGSNATFQLPGFLS SHVFEDDDEDFPSSPFKEGDGALGVTGSIHALGDLEISTATPSDRRHCILEDVDVELEMEDVSGHQKDERPSSTGGSFEMEPQQHCSDGPEPALNDSAEL LPQPDDSPPPPLDSPPPPPPLPTSPPPPLPLSPPPSTSPSPPPPPPLPPPPPPLPSQPPPLPSQPPPPLPPVPTMVLQPPVPTQPLLPAKPIQPSHSSVQ PSPQLAYQQAVPHEYCTTPNSNQIVQMAGGTPHGNHMFLNPQAPQQNPHFQPVNAPFPQRPLHPNLAQTASGHFSFTKPLIQQHPQHPYPRPYPMLSHPD GRPRFATDEQWRMPSSEYADGQHGAWMSGRNPSHAGPSFGQEGYFRPPPPNNMGFQVAPTNNLPAGAPIPGHGVSQMLPCRPDMPSLNCWRPAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	0	1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	1.41	0.9513
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	1.73	0.9358
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	2.00	0.9395	Pt-LD.2
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	2.44	0.9248
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	2.64	0.9201
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	2.82	0.9339	Pt-RPB1.1
					Potri.009G040500 [exp]	2.82	0.9126
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	3.00	0.9072
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	3.16	0.9326
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	4.00	0.8988

Compare expression of checked genes

Potri.005G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.