Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23120 43 / 3e-06 HCF136 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071300 [exp] 89 / 9e-23 AT5G23120 565 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017401 [exp] 43 / 5e-06 AT5G23120 563 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G092950.1 pacid=42805546 polypeptide=Potri.005G092950.1.p locus=Potri.005G092950 ID=Potri.005G092950.1.v4.1 annot-version=v4.1 ATGGTTTCTTTGCGCAGGAAGAGGCTTGGGCAGCAGGGGGCAGCGGGATTCTGTTGTGAACTACCAATGGTGGCAAGACATGGACCCGTGACAAAGCAGC TGACAGTATGCTGCCAATCTTTACCGAGTTTATTGATGACACGAAAGGATTTGTGCTGGGAAATCATGGGGTTTTGCTTCGGTATCTTGGATAAAGACAT TGCTTTCTCATGGTTTCTCAATGATGCTGCAATTTTGTATCCGTAA
AA sequence Show only first row Show all	>Potri.005G092950.1 pacid=42805546 polypeptide=Potri.005G092950.1.p locus=Potri.005G092950 ID=Potri.005G092950.1.v4.1 annot-version=v4.1 MVSLRRKRLGQQGAAGFCCELPMVARHGPVTKQLTVCCQSLPSLLMTRKDLCWEIMGFCFGILDKDIAFSWFLNDAAILYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	0	1
					Potri.001G054301 [exp]	4.47	0.6896
AT3G17030			Nucleic acid-binding proteins ...		Potri.008G105850 [exp]	11.61	0.5209
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	15.09	0.5680
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	17.97	0.5391
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	19.44	0.5373
					Potri.008G012050 [exp]	20.49	0.5193
					Potri.008G113301 [exp]	21.56	0.5477
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G010200 [exp]	22.64	0.5370
AT1G79250		AGC1.7	AGC kinase 1.7 (.1.2)		Potri.010G175900 [exp]	31.43	0.5215
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	37.52	0.5445

Compare expression of checked genes

Potri.005G092950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.