Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23660 413 / 2e-143 ATPPT1 polyprenyltransferase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093700 [exp] 505 / 4e-180 AT4G23660 432 / 8e-151 polyprenyltransferase 1 (.1.2.3) Potri.002G216100 [exp] 44 / 0.0002 AT2G44520 488 / 2e-171 cytochrome c oxidase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033224 [exp] 433 / 2e-151 AT4G23660 456 / 3e-160 polyprenyltransferase 1 (.1.2.3) Lus10001531 [exp] 146 / 2e-41 AT4G23660 183 / 3e-55 polyprenyltransferase 1 (.1.2.3) Lus10043358 [exp] 42 / 0.0008 AT2G44520 501 / 6e-177 cytochrome c oxidase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF01040 [poplar] [flax] UbiA UbiA prenyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.005G093600.1 pacid=42802528 polypeptide=Potri.005G093600.1.p locus=Potri.005G093600 ID=Potri.005G093600.1.v4.1 annot-version=v4.1 ATGTCGTTTTTACTCCGTCGCAGCATCACCGGAACCACCAGGTTTCTCTCCGCTTCACGCTATGTCTCCACCACGAGCCCTAACACTTATTATATCAGCC ACTGCCTTTTACTCTCACAGAACCAAATTCCTACTTTTCCATCCAATCTATCGTTCATGAGAGAAATCTCCACCTTTTCTAGCTCAAAAGATAAGAAACA ACAGGATGGAGAGCTATCAATGGGAGGAAAGGTTTCCTGGGTTGATGTGTACTTACCTAGACAAGTTAGACCTTATGCACATCTTGCTAGGATAGATAAG CAAATTGGGACTTGGCTTCTTGCTTGGCCTACCATGTGGTCAATAACGTTGGCAGCTGCACCAGGAAATCTTCCCGATTATAAGATGATTGGTCTGTTTG CTTTGGGTTCTTTGCTTGTAAGAAGCATTGCGTGTACTATAAATGATATTCTTGATAGAGACATTGATGCAAAGGTTGATCGGACGAAGCGTAGACCGCT TGCAAGCGGGGTGTTGAAGCCATCTCAAGGGGTTCTTTTTCTTGGTTTTCAGTTGTTTTTGGGTCTTGGGATTCTTCTTCAACTGAATAATTATAGCCGA GTTTTGGGAGTTTTATCTATGTTTCTCGTCTTCACCTATCCCCTCATGAAGAGATTTACTTATTGGCCTCAAGCTTATCTTGGTTTTACATTTAGCTGGG GAGCTTTACTGGGATGGTCGGCAGTTAAAGGATCTCTTGATCCAGCCATTGTTTTGCCTCTATACGCTAGCGGTATATTTTGGACTCTCGTGTATGATAC AATATATGCACACCAGGACAAGGAAGATGATCTCAAAGTGGGTGTTAAATCGACGGCCTTGTTGTTTGGGGATTCAACAAAGGAGTGGATTTCTGGGTTT GGAATTGCATGCATTGGTGGTCTTGCCCTCAGTGGATTCAACGCTGATCTTGGGTGGCCATTCTATGCGTTTTTGGCAGCAGGTTCTGGACAATTAGCTT GGCAAATATGGACAGTTAACCTATCCTGCCCCGCTGATTGCAGTAGAAAATTTGTGTCCAACAAATGGTTTGGGGCAATTGTATTCAGTGGGGTTTTACT TGGTAGACTTTGGTCGTAG
AA sequence Show only first row Show all	>Potri.005G093600.1 pacid=42802528 polypeptide=Potri.005G093600.1.p locus=Potri.005G093600 ID=Potri.005G093600.1.v4.1 annot-version=v4.1 MSFLLRRSITGTTRFLSASRYVSTTSPNTYYISHCLLLSQNQIPTFPSNLSFMREISTFSSSKDKKQQDGELSMGGKVSWVDVYLPRQVRPYAHLARIDK QIGTWLLAWPTMWSITLAAAPGNLPDYKMIGLFALGSLLVRSIACTINDILDRDIDAKVDRTKRRPLASGVLKPSQGVLFLGFQLFLGLGILLQLNNYSR VLGVLSMFLVFTYPLMKRFTYWPQAYLGFTFSWGALLGWSAVKGSLDPAIVLPLYASGIFWTLVYDTIYAHQDKEDDLKVGVKSTALLFGDSTKEWISGF GIACIGGLALSGFNADLGWPFYAFLAAGSGQLAWQIWTVNLSCPADCSRKFVSNKWFGAIVFSGVLLGRLWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093600 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	1.00	0.9438
AT5G45410			unknown protein		Potri.001G131300 [exp]	1.73	0.9191
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Potri.012G145600 [exp]	2.00	0.9219
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	3.74	0.9002
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088900 [exp]	4.47	0.9152
AT4G23900			Nucleoside diphosphate kinase ...		Potri.001G091001 [exp]	9.16	0.8952
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	9.74	0.8984
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022100 [exp]	9.94	0.9057
					Potri.011G046112 [exp]	10.09	0.8855
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	10.95	0.8829

Compare expression of checked genes

Potri.005G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.