Plant FIBer expression Database

Potri.005G093700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23660 432 / 9e-151 ATPPT1 polyprenyltransferase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G093600
[exp]
492 / 5e-175 AT4G23660 413 / 2e-143 polyprenyltransferase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033224
[exp]
461 / 3e-162 AT4G23660 456 / 3e-160 polyprenyltransferase 1 (.1.2.3)
Lus10001531
[exp]
157 / 3e-45 AT4G23660 183 / 3e-55 polyprenyltransferase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0613 Terp_synthase PF01040 UbiA UbiA prenyltransferase family
Representative CDS sequence
>Potri.005G093700.2 pacid=42805494 polypeptide=Potri.005G093700.2.p locus=Potri.005G093700 ID=Potri.005G093700.2.v4.1 annot-version=v4.1
ATGGCGTCGTTTTTGCTCCGTCGCGCTTCCTGCAGCGCCACCAGGATCCTCTCCTCTTCACTCGCTCTGCCCACCGCCACAATAATCCCCAAATCAAACC
CTAGCCCTAATTTTATCTATCACCACTATTTACTTCACCATTTCACTCAGTTTTCCCGCCAAAACAAAATTCCTAGCCCTTATTTAGGCTTCATTAAGGA
AATCTCCAATATTCCAAGCACAAAAGAAGAGAAAGAACACAAGCGAAACAATGGAGAGCTGCCAAAGAGAGGAGAGAAGTCTTGGATTGATGTCTATTTG
CCTAGACAAGTCCGGCCTTATGCACATTTAGCTAGGCTTGATAAGCCCATTGGGACCTGGCTTCTTGCTTGGCCTTGTATGTGGTCAATCTCATTGGCAG
CAGAACCTGGAAGTGTACCTAATTTTAAGATGATGGCGTTATTTGGCTGTGGGGCTTTGCTTTTAAGAGGAGCTGGGTGTACTATAAATGATTTGCTTGA
TAGAGATATTGATACGAAGGTCGAAAGGACAAAGCTAAGGCCAGTTGCCAGTGGTCTTTTGACGCCATTTCAAGGTCTTTGTTTTCTTGGTTTTCAATTG
TTTTTGGGTCTTGGGATTCTTCTTCAACTGAATAATTATAGCCGTATTTTGGGAGCTTCATCCTTGTTGCTAGTCTTCTCCTATCCCCTTATGAAGAGAT
TTACATTTTGGCCTCAAGCATATCTTGGTTTAACATTTAACTGGGGAGCTTTACTGGGATGGTCTGCAGTTAAGGGGAGTCTGGATCCAGCTATTGTGAT
ACCACTATATGCTAGTGGAGTATTTTGGACCCTGGTGTATGATACAATATATGCTCATCAGGATAAGGAAGATGATCTTAAAGTGGGTGTTAAATCGACG
GCCTTGAGATTTGGAGATTCAACAAAGGAGTGGATCACTGGGTTTGGAACTGCATGCATTAGTAGTCTTGCCCTCTGTGGATTCGATGCCGATATTGGGT
GGTCATTTTATGCATTTCTGGCAGCTGCTTCGGGTCAATTAGCTTGGCAAATATGGACAGTTGACCTATCATGCCGGGCTGATTGCAATAGAAAATTTGT
GTCAAACAAATGGTTTGGTGCTGTTGTTTTTAGTGGCATTTTGTTTGGTAGACTTTGGTCATAG
AA sequence
>Potri.005G093700.2 pacid=42805494 polypeptide=Potri.005G093700.2.p locus=Potri.005G093700 ID=Potri.005G093700.2.v4.1 annot-version=v4.1
MASFLLRRASCSATRILSSSLALPTATIIPKSNPSPNFIYHHYLLHHFTQFSRQNKIPSPYLGFIKEISNIPSTKEEKEHKRNNGELPKRGEKSWIDVYL
PRQVRPYAHLARLDKPIGTWLLAWPCMWSISLAAEPGSVPNFKMMALFGCGALLLRGAGCTINDLLDRDIDTKVERTKLRPVASGLLTPFQGLCFLGFQL
FLGLGILLQLNNYSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWSAVKGSLDPAIVIPLYASGVFWTLVYDTIYAHQDKEDDLKVGVKST
ALRFGDSTKEWITGFGTACISSLALCGFDADIGWSFYAFLAAASGQLAWQIWTVDLSCRADCNRKFVSNKWFGAVVFSGILFGRLWS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Potri.005G093700
[exp]
0 1
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.014G124100
[exp]
13.92 0.8786
AT1G26170 ARM repeat superfamily protein... Potri.008G109300
[exp]
16.30 0.8551
AT5G36930 Disease resistance protein (TI... Potri.011G009251
[exp]
25.00 0.8705
AT2G30480 unknown protein Potri.013G157800
[exp]
26.72 0.8398
AT4G02550 unknown protein Potri.006G196716
[exp]
29.46 0.8575
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.008G093901
[exp]
32.24 0.8631
AT4G31830 unknown protein Potri.018G106300
[exp]
35.72 0.8625
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Potri.017G067400
[exp]
40.34 0.8536 SYN2.1
AT3G24320 CHM1, ATMSH1, C... CHLOROPLAST MUTATOR, MUTL prot... Potri.010G065000
[exp]
40.79 0.7865 CHM.1
AT1G67080 ABA4 abscisic acid (aba)-deficient ... Potri.004G099500
[exp]
42.77 0.8473

Potri.005G093700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.