Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19760 693 / 0 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 574 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 491 / 7e-174 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 487 / 4e-172 EIF4A-2 eif4a-2 (.1.2) AT1G72730 476 / 1e-167 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 293 / 1e-94 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 278 / 5e-89 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 273 / 1e-86 DEA(D/H)-box RNA helicase family protein (.1) AT5G11200 235 / 3e-73 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 235 / 3e-73 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070000 [exp] 769 / 0 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 489 / 8e-173 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 486 / 9e-172 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 485 / 3e-171 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 481 / 6e-170 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 286 / 3e-92 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 286 / 5e-92 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G119000 [exp] 243 / 1e-75 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G028600 [exp] 232 / 3e-72 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017407 [exp] 719 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 707 / 0 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 468 / 7e-166 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017153 [exp] 453 / 1e-158 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 451 / 7e-158 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 451 / 7e-158 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 317 / 1e-106 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017804 [exp] 285 / 1e-91 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 283 / 1e-90 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 279 / 4e-89 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G093900.2 pacid=42804375 polypeptide=Potri.005G093900.2.p locus=Potri.005G093900 ID=Potri.005G093900.2.v4.1 annot-version=v4.1 ATGGCAACAAGCGTAGTACCAGCGGGGCGCAGCGCGCGGAGGGCGGCGGCGGAGGATGAAAAGCTGGTGTTTGAAACGACGGAGGGAGTAGAACCTGTGG CAAGTTTCGATGAGATGGGATTAAAAGAAGATTTATTGAGAGGGATTTATAATTATGGATTTGAAAAGCCATCAGCAATACAACAAAGAGCTTTAATGCC GATAATTAAAGGCCGTGATGTTATAGCGCAAGCTCAATCTGGTACTGGAAAGACTTCTATGATTGCTCTTACTGTTTGTCAGCTCGTTGATACTGCTAGC AGAGAGGTCCAGGCATTGATATTGTCACCTACAAGGGAACTGGCAGAGCAGACACAGAGAGTGATAACTGTAATTGGTGAAAACATTAATATACAAGTAC ATGCATGCATTGGAGGAAAAAGTGTGGGCGAGGATATTCGAAAACTAGAACATGGAGTTCATGTAGTTTCTGGGACTCCTGGCAGAGTCTGTGACATGAT CAAGAGGAGGTCATTACGCACAAGAGCCATCAGAGTACTAGTTCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGATCAAATCTATGACGTG TACAGATATCTCCCACCCGAGCTTCAGGTTGTCTTGATTTCTGCTACTCTTCCTAATGAAATTTTGGAGATTACTAGCAAGTTCATGACAGATCCTGTAA AGATTCTTGTGAAACGTGATGAGTTGACTCTGGAGGGCATCAAGCAATTTTTTGTTGCCGTGGAAAAAGAAGAATGGAAATTTGAGACTCTGACTGACCT TTATGATACTCTTACCATCACTCAAGCTGTTATTTTCTGCAATACAAAGCGAAAGGTTGATTGGCTAACTGCCAAGATGGTTGAATTTAATTTCACTGTC TCATCAATGCATGGTGACATGCCTCAAAAGGAGAGAGATGCAATTATGTCTAATTTCCGGTCTGGTGAAACTCGTGTACTGATCACAACTGATGTTTGGG CTCGGGGGCTTGATGTTCAACAGGTTTCTCTGGTGATTAACTATGACCTTCCAAACAATCGAGAGCTTTACATTCATCGAATTGGTCGTTCTGGTCGTTT TGGACGGAAGGGTGTTGCTATTAACTTCGTCAAAAGTGATGATATCAGGATTTTAAGAGATATTGAACAGTATTACAGCACCCAGATTGACGAAATGCCT ATGAACATCGGTGATCTGATATAA
AA sequence Show only first row Show all	>Potri.005G093900.2 pacid=42804375 polypeptide=Potri.005G093900.2.p locus=Potri.005G093900 ID=Potri.005G093900.2.v4.1 annot-version=v4.1 MATSVVPAGRSARRAAAEDEKLVFETTEGVEPVASFDEMGLKEDLLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVDTAS REVQALILSPTRELAEQTQRVITVIGENINIQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDV YRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVEFNFTV SSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMP MNIGDLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.005G093900 [exp]	0	1
AT2G42490			Copper amine oxidase family pr...		Potri.015G082900 [exp]	3.60	0.7814
AT4G00525			unknown protein		Potri.014G083100 [exp]	5.91	0.7568
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	10.00	0.7735
					Potri.015G054425 [exp]	10.53	0.7110
AT1G72930		TIR	toll/interleukin-1 receptor-li...		Potri.005G004000 [exp]	11.22	0.7351
AT5G20810			SAUR-like auxin-responsive pro...		Potri.018G063400 [exp]	12.48	0.7636
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	15.23	0.7183
AT3G52105			unknown protein		Potri.001G267501 [exp]	17.08	0.6796
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	21.44	0.7261
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	23.55	0.7581

Compare expression of checked genes

Potri.005G093900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.