Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13530 1979 / 0 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 1878 / 0 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G06030 239 / 6e-67 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G09000 236 / 8e-66 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 234 / 2e-65 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G53570 218 / 6e-60 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT4G08500 214 / 1e-58 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G63700 217 / 5e-58 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 214 / 6e-58 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G08470 206 / 3e-56 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070100 [exp] 2587 / 0 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.008G149500 [exp] 245 / 2e-68 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 242 / 2e-67 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.013G022700 [exp] 236 / 2e-65 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G033400 [exp] 235 / 3e-65 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.001G102900 [exp] 221 / 5e-59 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 216 / 3e-58 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 218 / 5e-58 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 216 / 1e-57 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010209 [exp] 1959 / 0 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10017408 [exp] 1927 / 0 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10000135 [exp] 457 / 1e-150 AT3G13530 434 / 2e-143 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10034060 [exp] 244 / 2e-68 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 244 / 3e-68 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 236 / 9e-66 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 227 / 2e-62 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10014976 [exp] 218 / 2e-58 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10003745 [exp] 204 / 2e-58 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10042698 [exp] 211 / 5e-58 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G094200.3 pacid=42803262 polypeptide=Potri.005G094200.3.p locus=Potri.005G094200 ID=Potri.005G094200.3.v4.1 annot-version=v4.1 ATGTCTCGGCAAACGACATCATCTCATTTTCATAAATCGAAGACTCTCGATAACAAATATATGCTTGGAGATGAGATTGGAAAAGGAGCGTATGCTCGGG TCTTTAAAGGGTTGGATTTGGAGAATGGAGATTTTGTTGCGATCAAACAAGTTTCATTGGAGAATATCGCCCAAGAGGATCTTAATATCATCATGCAAGA GATTGATTTACTGAAGAATTTGAACCATAAAAACATTGTGAAATATCTTGGATCATTGAAGACAAAGTCTCATCTCCACATAATCCTTGAGTATGTGGAG AATGGCTCGCTTGCAAATATTATCAAGCCAAATAAATTTGGGCCTTTTCCAGAGTCTTTGGTGGTTGTTTACATTGCCCAGGTTCTGGAAGGATTAGTTT ATTTGCACGAACAGGGTGTTATCCATCGAGATATCAAGGGTGCAAACATATTGACGACCAAAGAGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCAAC AAAATTAACTGAAGCTGATGTTAATACTCATTCGGTTGTTGGAACGCCATATTGGATGGCCCCAGAGGTTATTGAAATGTCAGGGGTTTGTGCTGCTTCT GACATCTGGAGTGTTGGCTGCACTGTGATTGAACTCCTTACGTGTGTACCACCTTACTATGATTTGCAGCCAATGCCAGCTCTCTTTCGTATTGTTCAGG ATGATCGTCCTCCGATACCTGATAGCTTATCTCCTGACATTACAGACTTTCTCCGCCAGTGCTTCAAGAAGGATGCAACGCAGCGGCCTGATGCAAAGAC ACTGCTTTCTCATCCTTGGATATTAAATTCTAGACGTGCTTTGAATTCTTTCCGTCATAGTGGACCAATAAGAAGCATACAGGAAGATGTTTCAGCAGAA GCAGAAATTTTAACTGGAGATAACCAGAGGACTGTTCAAATCAATTCTGTTGATAGAACAAAAGCATCTGTTGCCGACTTCAAAGCTGGCTCTAGGAAAG AATCATTGCCAGATTCTGAGGATGTGAGTAAGTCTGATAAGAATACTTCTTCAGATGGTGATGTAGTTGAGGAAAGAATTGATAAATTGGAAGATGATCT CCATTCAGATCAAGTCCCAACCCTAGCTATTCACGAAAACTCATCTCTAAAAACTAGTCCTGGCAGACTATCTACAAATAAAGTAGCTGCTGCTTCTCCT TTGCTTCATGGATCGATGCCTTTGCATTACCAGGATGAGATTCTGACTATTGATGACTTGGAATCTCCCGATGCAAGAGGAAAAAACATTGAAAGAAGGA ATGGAGGAAAAACAAGTCCTGCTCGTGTTGAGAATGGATCATTTGGTTTTGCAACAAGAAATCAAGATAATGGGCTTCGAAAGGCTGTGAAGACATCAAT GACCTCAGGAGGAAACGAACTTAGTAAATTTAGTGACACTCCAAGAGATGCTTCACTGGATGATTTATTTCACCCGCTTGATAAAAATCCTGAGGATCGG GCAGCTGAAGCTTCAACATCTACCTCAGCATCACATATGAACCAAGGGAATGCAATCATGGCTGATGCAGGGAAAAATGACCTGGCTGCAATTTTGAGAG CGACTATTGCTCAAAAACAAATGGAGAGTGAAACGGGACAAACTAATGGTGGTGGTGATTTGTTTCGCCTAATGATGGGTGTTCTAAAGGATGGCGTGAT TGATATTGATGGTTTGGATTTTGGAGACAAACTGCCGGCAGAAAATCTCTTTCCTCTACAAGCTGTTGAGTTTAGCAGGTTAGTTGGGTCATTAAGACCT GAGGAATCAGAAGATGTGATTACGTCTTCATGCCAGAAACTTATTAGCATCTTTCACCAGCGCCCCGAGCAGAAAATTGTTTTTATTACCCAGCATGGTT TGCTTCCTCTAATGGAATTACTTGAAGTTCCTAAACCTCGTGTTATATGCTCTATCCTTCAACTTATAAATCAGATCGTGAAAGATAATACTGATTTCCA GGAAAATGCTTGTCTTGTTGGCTTGATCCCTGTGGTTACGAGTTTTGCAGGACCTGATCGCCCTCGTGAAGTTCGCATGGAAGCAGCTTATTTCTTGCAG CAGCTATGCCAGTCAAGCTCCTTGACATTGCAAATGTTCATTGCTTGCCGAGGAATACCTATCCTGGTGGGTTTTCTAGAGGCTGATTACGCGAAGCACA GGGACATGGTTCACCTAGCTATCGATGGCATGTGGCAGGTCTTTAAGCTTCAGAGATCAACCCCAAGAAATGATTTCTGTCGCATAGCTGCAAAAAATGG AATACTGCTCAGACTTATCAACACGCTTTATAGCTTGAATGAGGCAACTAGGCTAGCTTCAATATCTGTGGGAACTGGATTTCCACTAGATGGTTTATCT CAACGACCACGATCTGGTCCCTTGGATTCCAATCATCCTATTTTCATTCAGAGCGAGACAGCTCTTTCTGCATCTGATCAGCCTGATGTCTTTAAAGTTA GACATGGAATGATTGATCATTCCTTGCCTTTTGGGACACAAGAACCATCACGTGCTTCAACTTCACATTCCCAAAGGTTGGATGCCATTCAACCAGATGC CAGATTTTTTGGGACAGACACAGATGGATCTCAGGCTAGCAATGAAACAATCGAAGCTATAGCTGCTTCCAAGTTGTCAGATCCAGCAGCTTTAGGAAAA GCTCCAAACATGGCCACCAAAGAACCTTCAGGTGCTGTTTCTAAAGAGCGAGATAACTTGGACCGGTGGAAAAGTGATCCATCTCGCCCAGAAATTGACC TTAGGCAGCAGCGAGTCACTGGTTCCACACAAAGGACATCTACTGACAGGCCTCCAAAGTTGATAGAAAGTGCATCAAATGGTCTTACTTCTATGATATC TGCCCAGCCAGAGCAAGTTCGTCCTCTTCTAAGCTTGTTGGAGAAGGAACCCCCCTCTAGGCATTTCTCTGGTCAGTTGGAGTATGCACGTCACCTCACA GGGTTAGAGAGACATGAAAGCATACTGCCTTTATTACATGCATCTGAGAAGAAAACAAATGGTGGATTAGAGTTTCTGATGGCAGAGTTTGCAGAGGTAT CTGGGCGTGGAAGAGAGAATGGAAATCTAGACTCCATTCCTAGAATTTCACACAAGACAGTGAGTAAGAAGGTTGGATCTCTTGCACCTAATGAAGGCGC TGCTTCCACATCTGGTATTGCATCTCAAACAGCATCTGGTGTACTGTCTGGTTCGGGTGTTCTAAATGCTAGACCTGGGAGTGCAACATCATCTGGGTTA CTTTCCCAGATGGTATCAACTATGAATGCAGAGGTTGCAAGGGAATACCTGGAGAAAGTGGCAGACCTTCTGCTGGAGTTTTCTCAAGCTGATACAACTG TAAAATCCTATATGTGTAGCCAAAGCTTGCTTAGTCGTCTTTTTCAGATGTTCAACAGAATTGAGCCCCCTATTCTTTTGAAGATACTTGAGTGTATCAA TAACCTGTCAACTGACCCGAACTGCTTAGAGAATCTTCAGCGCGCAGATGCAATTAAGTACCTGATCCCAAATCTTGAACTCAAAGACGGGCCTCTTGTA GATCAAATTCATAGTGAGGTCCTCAATGCACTTTTTAACCTCTGCAAGATAAATAAGAGGAGGCAGGAACAAGCTGCTGAAAATGGAATCATTCCACACT TGATGAATTTTATTATGTCAGATTCTCCTTTAAAACCTCATGCATTACCTCTACTGTGTGACATGGCTCATGCATCACGTAATTCAAGAGAGCAATTGAG GGCTCATGGTGGATTGGATGTATACTTGAGCCTGCTGGATGATACGGTTTGGTCAGTGACAGCATTGGACTCTATTGCTGTTTGCTTGGCTCATGACAAT GACAACCGCAAAGTGGAACAAGCATTGCTAAAAAAGGACGCAGTTCAGAAATTAGTGAAGTTTTTCCAATGCTGCCCGGAACAACAATTTGTGCACATAT TGGAGCCATTCTTGAAAATTATAACGAAATCATCTCGGATAAATACGACGTTAGCTGTTAATGGCTTGACACCTCTGCTCATTGGGAAACTGGATCATCA GGATGCCATTGCTCGTCTTAATCTGCTTAAACTAATAAAGTCTGTGTATGAGCACCACCCCCGTCCAAAGCAGTTGATCGTGGAGAATGATTTGCCCCAA AAACTCCAGAACTTGATCGAGGAACGTAGGGATGGGCAAAGCTCCGGAGGCCAAGTGCTAGTTAAACAAATGGCTACTTCGCTACTTAAAGCACTTCATA TAAATACCGTTCTGTAA
AA sequence Show only first row Show all	>Potri.005G094200.3 pacid=42803262 polypeptide=Potri.005G094200.3.p locus=Potri.005G094200 ID=Potri.005G094200.3.v4.1 annot-version=v4.1 MSRQTTSSHFHKSKTLDNKYMLGDEIGKGAYARVFKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVE NGSLANIIKPNKFGPFPESLVVVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAAS DIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDRPPIPDSLSPDITDFLRQCFKKDATQRPDAKTLLSHPWILNSRRALNSFRHSGPIRSIQEDVSAE AEILTGDNQRTVQINSVDRTKASVADFKAGSRKESLPDSEDVSKSDKNTSSDGDVVEERIDKLEDDLHSDQVPTLAIHENSSLKTSPGRLSTNKVAAASP LLHGSMPLHYQDEILTIDDLESPDARGKNIERRNGGKTSPARVENGSFGFATRNQDNGLRKAVKTSMTSGGNELSKFSDTPRDASLDDLFHPLDKNPEDR AAEASTSTSASHMNQGNAIMADAGKNDLAAILRATIAQKQMESETGQTNGGGDLFRLMMGVLKDGVIDIDGLDFGDKLPAENLFPLQAVEFSRLVGSLRP EESEDVITSSCQKLISIFHQRPEQKIVFITQHGLLPLMELLEVPKPRVICSILQLINQIVKDNTDFQENACLVGLIPVVTSFAGPDRPREVRMEAAYFLQ QLCQSSSLTLQMFIACRGIPILVGFLEADYAKHRDMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILLRLINTLYSLNEATRLASISVGTGFPLDGLS QRPRSGPLDSNHPIFIQSETALSASDQPDVFKVRHGMIDHSLPFGTQEPSRASTSHSQRLDAIQPDARFFGTDTDGSQASNETIEAIAASKLSDPAALGK APNMATKEPSGAVSKERDNLDRWKSDPSRPEIDLRQQRVTGSTQRTSTDRPPKLIESASNGLTSMISAQPEQVRPLLSLLEKEPPSRHFSGQLEYARHLT GLERHESILPLLHASEKKTNGGLEFLMAEFAEVSGRGRENGNLDSIPRISHKTVSKKVGSLAPNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGL LSQMVSTMNAEVAREYLEKVADLLLEFSQADTTVKSYMCSQSLLSRLFQMFNRIEPPILLKILECINNLSTDPNCLENLQRADAIKYLIPNLELKDGPLV DQIHSEVLNALFNLCKINKRRQEQAAENGIIPHLMNFIMSDSPLKPHALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDTVWSVTALDSIAVCLAHDN DNRKVEQALLKKDAVQKLVKFFQCCPEQQFVHILEPFLKIITKSSRINTTLAVNGLTPLLIGKLDHQDAIARLNLLKLIKSVYEHHPRPKQLIVENDLPQ KLQNLIEERRDGQSSGGQVLVKQMATSLLKALHINTVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	1.41	0.8213
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	1.73	0.7607
AT5G58100			unknown protein		Potri.018G150600 [exp]	3.74	0.7633
AT3G14160			2-oxoglutarate-dependent dioxy...		Potri.003G070100 [exp]	6.00	0.7377
AT2G32970			unknown protein		Potri.002G224900 [exp]	8.06	0.7599
AT1G15780			unknown protein		Potri.003G013300 [exp]	9.48	0.7416
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	11.22	0.7366
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.001G237100 [exp]	14.69	0.7272
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	16.24	0.7082
AT2G32970			unknown protein		Potri.014G158200 [exp]	16.70	0.7090

Compare expression of checked genes

Potri.005G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.