Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALATS.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50200 1535 / 0 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT5G22800 461 / 4e-146 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT3G16565 62 / 4e-10 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141300 [exp] 479 / 4e-153 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.007G070250 [exp] 286 / 3e-89 AT1G50200 266 / 1e-82 Alanyl-tRNA synthetase (.1.2) Potri.010G024900 [exp] 52 / 6e-07 AT3G16565 338 / 2e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010210 [exp] 1610 / 0 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2) Lus10017408 [exp] 1600 / 0 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10022640 [exp] 478 / 7e-153 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10003337 [exp] 406 / 7e-125 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10000503 [exp] 45 / 0.0001 AT3G16565 269 / 2e-91 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF01411 [poplar] [flax] tRNA-synt_2c tRNA synthetases class II (A) CL0040 [poplar] [flax] PF02272 [poplar] [flax] DHHA1 DHHA1 domain CL0094 [poplar] [flax] Peptidase_ME PF07973 [poplar] [flax] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Potri.005G094300.1 pacid=42803782 polypeptide=Potri.005G094300.1.p locus=Potri.005G094300 ID=Potri.005G094300.1.v4.1 annot-version=v4.1 ATGAAGAGAATAACAAGTAGTAGGCCACTGCTCTCATCTCCTCTTCTTCGTCTTCTTCGTCAACCTCCCATCTCTTTAGCGGCGGCTAGGGTTTCTTCAA AACAACCTAATTTCTCCCCCTTCACTTCTCTCGCTCGCTCCTTCTCCACCATGTCTGGAGGCATCGATTCTCCGCAACCTGACGTAGACTGGCCAGCGAA TAGAGTACGCGATACCTTCATCAAGTTCTTCGAAGAGAAGAATCACGTCGATTGGAAATCTAGCCCTGTAGTTCCTGTAAACGACCCTACTCTCCTCTTC GCTAATGCTGGAATGAATCAATTTAAGCCAATATTTTTGGGAACCGCGGATCCAAATACGGCATTGAGTAAGCTGTCGCGTGCCTGCAACACGCAGAAAT GTATACGCGCGGGAGGGAAACATAATGATTTAGATGATGTTGGAAAAGATACATATCACCATACCTTTTTCGAGATGTTAGGGAATTGGTCTTTCGGTGA TTATTTTAAAAAAGAAGCTATTGAGTGGGCTTGGGAGCTTCTAACTAAGGTTTATAAGTTGCCGGCTGATAGGATTTATGCGACTTATTTTGGTGGGGAT GAGAAAGCAGGGCTGGCACCTGATAATGAAGCTAGGGATATTTGGCTTCAATTTTTGCCACCGGGAAGGGTGCTTCCATTCGGCTGTAAAGATAATTTTT GGGAGATGGGTGATACTGGTCCTTGTGGACCGTGTACCGAAATTCATTACGATAGAGTTGGTAATCGCAATGCAGCAATGTTGGTTAACAATGATGATCC TACATGCCTTGAAATATGGAATCTTGTCTTTATTCAGTTCAACCGAGAAAGTGATGGTTCCTTGAAATCCTTACCTGCTAAGCATGTTGACACTGGAATG GGTTTTGAAAGATTGACTTCTGTACTTCAGAACAAGATGAGCAATTATGACACTGATGTGTTCATGCCCATCTTTGATGCCATACAGCAGGCAACAGGGG CACGACCTTATTCTGGAAAAGTTGGGGCTGATGATGTAGATGGGGTTGACATGGCATACAGGGTGGTTGCTGATCACATTAGAACACTCTCATTTGCTAT TGCTGATGGTTCTTGTCCAGGCAATGAGGGTCGTGAGTACGTCCTTAGGCGTATTCTTCGCCGTGCTGTTCGATATGGTAGTGAGGTCTTGAAAGCTCAA GAAGGATTTTTCAATGGGCTTGTAAATGTTGTTGTGAAAGTGATGAGTGATGTTTTCCCAGAGCTGAAACGAAATGAAGAACACATTAGGGAGACTATTG CAGCTGAAGAAGCAAGTTTTGGCAAGACTTTGCTCAAGGGAATTGAGAAATTTAAAAAGGCTGCTCAAGAGGTCGAGGGGAAGGTGTTGAGTGGGCAGGA TGCGTTTGTCTTGTGGGATACATATGGCTTCCCATTAGATTTGACTCAGTTAATGGCAGAAGAAAGAGGATTGCGGGTTGACGTGGAAGGTTTCAATAAT GCCATGGATGAGGCAAGGGAAAGATCACGAAATGCCCAAAATAAGCAAGCTGGTGGTGCTATCGTCATGGATGCTGATGCGACATCTGCATTGCACAAGA AGGGTGTTTCTGCAACAGATGATTCCTTCAAATTTATTTGTTTTGAGGATCATGAAAGTGTAATAAAAGCTATCTACAATGGTTCTGAATTCTTGGAAAG TGCTGCAGCTGCCAATGAAGTCGGTATTGTTCTGGAGTCTACTAGTTTCTATGCTGAGCAAGGTGGACAGATTTTTGATACTGGAGTACTTGAAGGCCCT TTTGGTTCATTCCAAGTTTGCAATGTCCAAATTTTTGGAGGATTTATTGTTCATATTGGTTCTCTTACTGGAGTCAGCGGCAGATTTTCTGTAGGTGAAA AAGTTACCTGCAAGGTTGACTATGATAGGCGTAAGCTCATTGCTCCCAACCATACCTGTACGCACATGTTGAATTTTGCTCTCAGGGAAGTTCTTGGCAA TCATGTTGACCAGAAGGGATCAATTGTTCTTCCTGAAAAACTAAGATTTGATTTTTCTCATGGTAAACCAGTGGATCCTGAGCTTTTAAGAAAAATTGAG TCAATTGTGAATGGGCAGATCAAAGATGAATTAGGTGTATTTGCAAAGGAAGCAACCCTTGCTGAAGCCAAGCAGATCAATGGTTTGCGAGCTGTTTTTG GAGAAGTCTATCCTGATCCAGTTAGAGTTGTTTCAATTGGTCGAAAAGTTGAGGACCTCCTAGCTAATCCAGAAAATGAAGAATGGTTATCTATCTCAGC AGAACTCTGTGGAGGGACACATATAACAAATACCCGGGAAGCAAAGGCATTTGCTCTTTTATCTGAGGAGGGAATTGCAAAAGGAATTCGAAGGATAACT GCTGTGACAACTGATGGTGCTTTTAAAGCAATGGAATTGGCACACTCACTAGAGCAGGAAGTTGATGAGGCATCTAAGGCAGATGGAAGTTTACTGGAAA AGAAAGTAGCATCTCTTAAAACTCGGGTGGACTCAGCACTTATTCCAGCAGCCAAGAAAGCTGATATCAGGGCCAAGATTTCAGTACTACAGAATAAAGT GAGGAAAGCACAAAAGAAGATTGCTGAGGAGAACATGCAGAAGGCTGTTGAGGTTGCAACTGAGATGGCTGAAGTTGCCTCTTCAGATGGGAAGGCCTTC TGCATCTCTCATGTTGATGTCGGTCTAGATGCAGCTGCTGTCCGAGAAGCTGTTTTGAAAGTCTTGGAGCGGAAGGGGATTTCTGCTATGGTTTTCAGCA CTGATGAAAGCACAAACAAGGTTGTGGTGTGTGCTGGTGTGCCAGAGAAGCTGGACAAGGGAAAGGGGTTGGAAGTATCAGAGTGGCTAACTACTGCTTT GGGGCCTCTGAAAGGGAGGTGCGGCAAAGGAAAAGCGGGCCTTGCCACCGGCCAGGGAACTGATGCATCGCATTTGGATGAGGCCATGGGTTTGGCAACA ACATTCGCACAGATGAAGTTGAGATGA
AA sequence Show only first row Show all	>Potri.005G094300.1 pacid=42803782 polypeptide=Potri.005G094300.1.p locus=Potri.005G094300 ID=Potri.005G094300.1.v4.1 annot-version=v4.1 MKRITSSRPLLSSPLLRLLRQPPISLAAARVSSKQPNFSPFTSLARSFSTMSGGIDSPQPDVDWPANRVRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLF ANAGMNQFKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYKLPADRIYATYFGGD EKAGLAPDNEARDIWLQFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRVGNRNAAMLVNNDDPTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGM GFERLTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ EGFFNGLVNVVVKVMSDVFPELKRNEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEVEGKVLSGQDAFVLWDTYGFPLDLTQLMAEERGLRVDVEGFNN AMDEARERSRNAQNKQAGGAIVMDADATSALHKKGVSATDDSFKFICFEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSFYAEQGGQIFDTGVLEGP FGSFQVCNVQIFGGFIVHIGSLTGVSGRFSVGEKVTCKVDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIE SIVNGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEWLSISAELCGGTHITNTREAKAFALLSEEGIAKGIRRIT AVTTDGAFKAMELAHSLEQEVDEASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKAVEVATEMAEVASSDGKAF CISHVDVGLDAAAVREAVLKVLERKGISAMVFSTDESTNKVVVCAGVPEKLDKGKGLEVSEWLTTALGPLKGRCGKGKAGLATGQGTDASHLDEAMGLAT TFAQMKLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.005G094300 [exp]	0	1	Pt-ALATS.1
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	2.82	0.7603
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	7.93	0.7479
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	17.74	0.7585
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.002G161700 [exp]	19.07	0.6872
					Potri.010G007976 [exp]	19.44	0.7639
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	24.49	0.7239
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	24.71	0.7365	Pt-LOS1.2
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.001G349400 [exp]	30.19	0.7528
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	31.46	0.6625	TFIIB1.2
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	32.75	0.7111

Compare expression of checked genes

Potri.005G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.