Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27470 731 / 0 seryl-tRNA synthetase / serine--tRNA ligase (.1) AT1G11870 253 / 7e-79 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070501 [exp] 451 / 1e-159 AT5G27470 380 / 3e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.002G100300 [exp] 264 / 9e-83 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017409 [exp] 731 / 0 AT5G27470 748 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010211 [exp] 729 / 0 AT5G27470 745 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010212 [exp] 477 / 4e-168 AT5G27470 474 / 4e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010344 [exp] 247 / 1e-76 AT1G11870 786 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3) Lus10036477 [exp] 238 / 2e-73 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0298 [poplar] [flax] tRNA_bind_arm PF02403 [poplar] [flax] Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G094400.1 pacid=42804665 polypeptide=Potri.005G094400.1.p locus=Potri.005G094400 ID=Potri.005G094400.1.v4.1 annot-version=v4.1 ATGTTAGACATCAACTTGTTTCGCGAAGAGAAAGGCAACAACCCAGAGAAAATACGCGAGTCACAGCGCCGTCGTTATGCTAACACCGAGATCGTCGATG AAATCATTCAGTTTGATAACGAATGGCGGCAACGTCAATTTGAGCTTGATAGTTTGCGTAGAGAGTTTAATAAGCAGAACAAAAAAGTCGCGCAGCTTAA AATCGCGAAAGAGGATGCAACGGAAGCGATTAGAGAGACTGAAGAGACGAAAAAATTGATAGCAGATAAGGAAAAGGAGGTACAAGAGGCTAAAGATGCA CTGTATTCAAGATTGCCAACTATTGGTAATCTTGTGCACGACTCAGTCCCGGTTAACGATAACGAGGATTTTAATGCTGTGATTCGGGCATGGGGGGAGA AGCGTGTTGAGAAGAAATTGAGGAATCATGTTGACCTTGTTGAACTTCTTGGAATTGCGGACTTGAAGAAAGGTGCTGATGTAGCAGGAGGTAGAGGCTT CTACCTCAAAGGTGATGGTGTCCGACTTAACCAAGCATTGATCAACTTTGGCCTAGAATTCTTGGAGAAGAGGGGGTACACAGCCTTGCAAACACCCTTT TTTATGAGAAAAGATGTCATGGCAAAGTGTGCCCAATTAGCACAATTTGATGAAGAACTTTACAAGGTTACTGGTGAAGGAGATGACAAATATCTAATCG CAACTGCTGAACAACCACTATGTGCGTATCATCTTGATGATTGGATCCATCCTTCACAGTTACCAATCAGATATGCTGGGTACTCATCTTGTTTCCGTAA AGAGGCTGGTGCACATGGTCGTGATACTCTAGGCATTTTCAGGGTTCATCAGTTTGAGAAAGTGGAACAATTCTGCATTACCAGCCCAAATGGCAATGAT TCTTGGGAGATGCATGAGGAAATGATCAAGAACTCTGAGGAGTTTTACCAGGAGCTAAACATCCCGTATCAAGTTGTTGCAATTGTTTCTGGTGCTTTGA ATGACGCAGCAGCGAAGAAGTATGACTTGGAAGGCTGGTTTCCTGCTTCCAATACTTACAGAGAGCTGGTCTCCTGTTCGAACTGCACAGACTACCAGTC AAGAAGATTAGAAATTAGATACGGGCAGAAAAAGAGCAATGAGCAGGTAAAGCAATATTGTCACTTGTTGAACTCTACCCTTACAGCAACAGAGAGGACT ATTTGCTGCATCCTGGAGAACTATCAGAAGGAAGATGGAGTAGAGGTTCCAGAGCCCCTGAGAAAATATATGAGCGGCAAAGAATTCCTACCTTTCCAAA ATAAGCCGTCCACTGAAGGCAAGGGGAAGAAACCAAAAGCCTAG
AA sequence Show only first row Show all	>Potri.005G094400.1 pacid=42804665 polypeptide=Potri.005G094400.1.p locus=Potri.005G094400 ID=Potri.005G094400.1.v4.1 annot-version=v4.1 MLDINLFREEKGNNPEKIRESQRRRYANTEIVDEIIQFDNEWRQRQFELDSLRREFNKQNKKVAQLKIAKEDATEAIRETEETKKLIADKEKEVQEAKDA LYSRLPTIGNLVHDSVPVNDNEDFNAVIRAWGEKRVEKKLRNHVDLVELLGIADLKKGADVAGGRGFYLKGDGVRLNQALINFGLEFLEKRGYTALQTPF FMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPLCAYHLDDWIHPSQLPIRYAGYSSCFRKEAGAHGRDTLGIFRVHQFEKVEQFCITSPNGND SWEMHEEMIKNSEEFYQELNIPYQVVAIVSGALNDAAAKKYDLEGWFPASNTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQVKQYCHLLNSTLTATERT ICCILENYQKEDGVEVPEPLRKYMSGKEFLPFQNKPSTEGKGKKPKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27470			seryl-tRNA synthetase / serine...		Potri.005G094400 [exp]	0	1
AT3G02560			Ribosomal protein S7e family p...		Potri.016G100400 [exp]	9.11	0.9291
AT5G64140		RPS28	ribosomal protein S28 (.1)		Potri.016G063100 [exp]	14.49	0.9202
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Potri.006G103700 [exp]	17.20	0.9167
AT2G39390			Ribosomal L29 family protein ...		Potri.006G214200 [exp]	23.23	0.9147
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.012G052700 [exp]	23.36	0.9136	Pt-GBF1.3
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.001G304700 [exp]	23.87	0.9167	RPS16.3
AT2G35790			unknown protein		Potri.010G219000 [exp]	30.39	0.9019
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.003G102800 [exp]	30.72	0.9133	ATBBC1.3
AT2G03430			Ankyrin repeat family protein ...		Potri.010G161300 [exp]	32.15	0.8632
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	32.98	0.8759

Compare expression of checked genes

Potri.005G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.