Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79570 641 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 634 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 602 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 463 / 4e-144 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 454 / 1e-139 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 429 / 6e-130 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 421 / 3e-128 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 187 / 9e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 179 / 6e-48 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 177 / 1e-45 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069500 [exp] 1883 / 0 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.001G123500 [exp] 785 / 0 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 663 / 0 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 462 / 6e-143 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 459 / 5e-142 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 431 / 4e-131 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 433 / 1e-129 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 419 / 6e-127 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 424 / 4e-126 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031173 [exp] 704 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 700 / 0 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10038160 [exp] 466 / 4e-154 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 429 / 5e-136 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 417 / 3e-135 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 429 / 3e-131 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 429 / 4e-129 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 431 / 7e-129 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 381 / 1e-112 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 180 / 1e-46 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G095200.4 pacid=42802873 polypeptide=Potri.005G095200.4.p locus=Potri.005G095200 ID=Potri.005G095200.4.v4.1 annot-version=v4.1 ATGGAAGAGTCAGAGATATATAAACAACATCAATACAATTATGGGGATCCTAGACATGAGATATCCCAGCCTGCTTCTCAGGCATATACCTCAGACCCTT CAAGTAGCAGGAATTCCAATACAAGAGTTCCTGACCTAAATGTACCACCACCAGAAGTTAAACCTGTACGTAACTATTCCATTCAGACAGGTGAGGAGTT TGCTCTCGAATTTATGCGTGATCGGGTCATTCCTAAGAAGCCTCTCATTCCAAATGCTGTTGGCGATCCCAACTATGTGACTGGTTATCTGGAACTAAAA GGTATTTTAGGCATTAGTCATACAGGGTCTGAAAGCGGTTCAGATATTTCGATGCTAACCATGGTAGAGAGAGGTCAAAAAGACTTTGAGAGGATGGACT CATCTTTACATGAAGAGAGAAGCAACTATGGGTCAATTCAGTTGGTACCAAGAACTTCATCTGGTTATGAAAGCCATGGAGCTCCGCATGGCTATGCCTC CTCTGGAGCCTCCGATAGCTTCTCTGGGAAAATGAAAGTTCTCTGCAGCTTTGGTGGTAAAATCCTACCACGGCCAAGTGATGGACAACTGAGGTATGTT GGAGGTGAAAAGCGCATTATGTGTATTGCAAGGGACATTTCTTGGCATGAGTTTAAGCAGAAAACTTTAGCAATATATTACGAAGCTCGCGTCATAAAAT ATCAGCTTCCTGGTGAAGATCTTGATGCCTTGGTTTCTGTTTCATGTGACGAGGATCTGCTGAATATGATGGATGAATGGAGTGAAATTGAAGATAGAGA AGGATCACAAAAACTCAGATTGTTTCTGTTTTCAATGAGTGATTTGGAAGATGCTCAACTGGGCCTGGGCAGTGCGGAGGGTGATTCTGAGATTCAGTAT GTAGTTGCTGTCAATGGCATGGACATGGGATCCAGAAGAGGATCAGCCCTGCATGGTTTGGCAAGCCCTTCAGGAAACATTGACAGGGAGACGACCAGTG TTGCATCTGCTTGGGTCAGCGCTTCACCTTTGGTTGGCACTTACCACTCTTCTCAACCTACTCTTCAAAGTTCCTCCAATGCCTACGAGACCTATCCACA ATTTTATCATGACCAGATGATGGATCATAGAGACACTAAGCATTTCCCATTGCACTATCACCATCATTCCTCTAATGACTCTCCTCTTGGAGAAATCCCT TATTCAAGGCAACTTCAAGGGCATATGAATGAAGAAGCAGATTTTTACGAAGGACATCAATGTATTAGCGTTCAGATGAAGAATTCGCAGATGCCAGGGA AGGAGGTGAATCCAAAACCTGCTGGTTCAATTCAGCAAAAGATTGACTTGGGAAAAACTCATGCGATAGAGAATATTTACCCTGCTCCAGTTGATGAAGT ACCAGTACCAGCTGCTGTGCCAGAAGGAGATCTAAGTACCATACCATCAAAATATGAGGGGAAATGCCAAGAACCAAAGAAGGTTTCTTCTTTTGTTGAT GATGTGAATCAAGTACAGGTTCCTAGATCTCATGAAGATGATCAACACTCCACACCCAGTGGTGCATCTGGTCCAGGAAATGCTGATTCTACTTCGAATC CAGTTGACTTGAACTATCTTGAGCCATCAATACCTCCTCAGAGGGTTTATTATTCGGAGAGAATACCCCGGGGTCAAGCAGAGTTACTGAACAGGTTATC CAAGTCTGATGATTCACTTGGCTCTCAGTTGCTCATTTCTCATTCACATCCAGGCATCACCGAGAACAATCCAGTTATGGAATCAGTGGAAAATTTGCAT GAGAGTAATTTGGCTGCCCACACTGAACACTTCATTTCAACTGAAAAACCATCATGTACAGACTCTCAAATCATAGATGATGGAGTCGCTCAATTTCAAC AACATAAAGAGTTTTCCGATGCCATTTCTCAGATGAATAACAAGCTCCCTGATTCCGAACAGGTGTCAGATTTTGGGTTCAAGCAGGCAGTTGCTAAGAA TGTTGATGAAAATGATTCTGCAAACAGGGATAGGATTCTCAAGGAAGACTTTGAGACAGATATGGCCACTGGTAATCATAGGAAACTCCCAGCTGATGTA AAGGGAGAAGTGGGATCTGGACATCTGGCTGTGCACCAAGTAACTTGTGTTGTGCAGCATAAGGATCCTACAGCTGATCTTCCAGATGACTTGGATGAGA TGACAACCAGGAATGTCTCTGATGAGGACAGTCTGAGACATTTTCAGCCATTTTCTTGGACAGATAGCTCAGCTAAAGTTGTTGCAGAAGGAATACCCCC TGTCACTGTTTCAGCCACCAAGCAGGCAGAAATCCAAATCGATATAAATGATAGATTCCCTCGTGATTTCATTTCTGAAATATTCTCAAAAGGGATATTT ACTGAGGACACCCCTGGTCTTAGTCCACTACACAGTGATGGAGCTGGTGTGAGTGTAAACATGGAAAATCATGAGCCGAAGCACTGGTCATATTTTCAGA AGCTGGCAAAGGAAGAGTTTGTTCAAAAAGATATTTCTCTTATTGACCAGGATCATCTAACTACTCCATCTGTGCTTACAAATGTAGATCATAAATCTTA TCATTTCACACATTTGGCAGAAGGTGGAGATTCAGTGGGCCATGACTATTCCCAAATTATTTTTGGCCAAGACAATCAGAATAATTTACCTGGAATGGTA GGAGCTGATTCTACAATGATGTCTGATTTTGATCATTCCCAATTGAAGGAGACAGAAAGTATGCAGTTTGAGGCTATGATGGAGAACCTACAGTCACCAG ATTCACAGTATGAGGATGGGAAGTTGGATAACAAGAACGATGGCCTTCCTCCTTGCGATCCTTCTCTGGGAGATTTTGATATCAATACCTTGCAGGTAAT AAAAAATGAAGATCTTGAAGAGCAGAAAGAATTGGGTTCTGGCACTTTTGGAACTGTGTATCATGGAAAGTGGAGGGGCACTGATGTTGCCATTAAGAGG CTAAAGAAGATCTGTTTCACAGGTCGATCGTCAGAGCAAGAGAGACTGACCTTGGAGTTTTGGCGGGAAGCTGGCATCCTTTCAAAGCTCCACCATCCAA ATGTTGTTGCATTTTATGGTGTAGTTCAAGATGGACATGGGGGGACATTAGCTACTGTAACAGAGTACATGGTTGATGGTTCTCTTAGAAATGTTTTACT TCGCAAGGATAGGTATCTAGATCGTCGCAAGAGACTTCTCATAGCTATGGATGCTGCGTTTGGAATGGAATATCTGCATTCGAAGAATATTGTACATTTT GATTTGAAATGTGACAACTTGCTTGTGAACTTGAAAGATCCCCAACGACCAATCTGCAAGGTTGGTGATTTTGGCCTGTCAAAAATCAAACGAAATACTT TGGTTTCTGGAGGTGTAAGGGGAACTCTACCATGGATGGCCCCCGAGCTTCTAAATGGAAGCAGTAATAAGGTTTCAGAAAAGGTTGATGTTTTCTCTTT TGGAATTGTCCTTTGGGAAATTCTCACCGGTGAGGAGCCCTATGCCAACATGCACTATGGTGCAATTATAGGGGGGATTGTAAACAACACACTGAGACCA ACTATTCCAAGTTATTGTGATTCTGAATGGGGAATACTAATGGAGCAGTGTTGGGCCCCAAATCCTGGAGTTAGGCCTTCCTTCACAGAAATTGCCAGTC GTTTGCGCATAATGTCAGCAGCTGCTAGCCAAGGCAAAGGACACGGAAACAAGGCATCAAAGTAG
AA sequence Show only first row Show all	>Potri.005G095200.4 pacid=42802873 polypeptide=Potri.005G095200.4.p locus=Potri.005G095200 ID=Potri.005G095200.4.v4.1 annot-version=v4.1 MEESEIYKQHQYNYGDPRHEISQPASQAYTSDPSSSRNSNTRVPDLNVPPPEVKPVRNYSIQTGEEFALEFMRDRVIPKKPLIPNAVGDPNYVTGYLELK GILGISHTGSESGSDISMLTMVERGQKDFERMDSSLHEERSNYGSIQLVPRTSSGYESHGAPHGYASSGASDSFSGKMKVLCSFGGKILPRPSDGQLRYV GGEKRIMCIARDISWHEFKQKTLAIYYEARVIKYQLPGEDLDALVSVSCDEDLLNMMDEWSEIEDREGSQKLRLFLFSMSDLEDAQLGLGSAEGDSEIQY VVAVNGMDMGSRRGSALHGLASPSGNIDRETTSVASAWVSASPLVGTYHSSQPTLQSSSNAYETYPQFYHDQMMDHRDTKHFPLHYHHHSSNDSPLGEIP YSRQLQGHMNEEADFYEGHQCISVQMKNSQMPGKEVNPKPAGSIQQKIDLGKTHAIENIYPAPVDEVPVPAAVPEGDLSTIPSKYEGKCQEPKKVSSFVD DVNQVQVPRSHEDDQHSTPSGASGPGNADSTSNPVDLNYLEPSIPPQRVYYSERIPRGQAELLNRLSKSDDSLGSQLLISHSHPGITENNPVMESVENLH ESNLAAHTEHFISTEKPSCTDSQIIDDGVAQFQQHKEFSDAISQMNNKLPDSEQVSDFGFKQAVAKNVDENDSANRDRILKEDFETDMATGNHRKLPADV KGEVGSGHLAVHQVTCVVQHKDPTADLPDDLDEMTTRNVSDEDSLRHFQPFSWTDSSAKVVAEGIPPVTVSATKQAEIQIDINDRFPRDFISEIFSKGIF TEDTPGLSPLHSDGAGVSVNMENHEPKHWSYFQKLAKEEFVQKDISLIDQDHLTTPSVLTNVDHKSYHFTHLAEGGDSVGHDYSQIIFGQDNQNNLPGMV GADSTMMSDFDHSQLKETESMQFEAMMENLQSPDSQYEDGKLDNKNDGLPPCDPSLGDFDINTLQVIKNEDLEEQKELGSGTFGTVYHGKWRGTDVAIKR LKKICFTGRSSEQERLTLEFWREAGILSKLHHPNVVAFYGVVQDGHGGTLATVTEYMVDGSLRNVLLRKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHF DLKCDNLLVNLKDPQRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRP TIPSYCDSEWGILMEQCWAPNPGVRPSFTEIASRLRIMSAAASQGKGHGNKASK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79570			Protein kinase superfamily pro...		Potri.005G095200 [exp]	0	1
AT5G59070			UDP-Glycosyltransferase superf...		Potri.009G038400 [exp]	1.00	0.6739
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	7.93	0.5913
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	20.59	0.5723	Pt-GLT1.3
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	25.84	0.5898	POL.2
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.001G200500 [exp]	28.77	0.5654
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	32.40	0.5574
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	32.51	0.5751	Pt-LECRK7.1
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	34.72	0.5688
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117600 [exp]	35.41	0.5434	CYP72D1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.008G123300 [exp]	37.54	0.5657

Compare expression of checked genes

Potri.005G095200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.