Plant FIBer expression Database

Pt-MST2.1 (Potri.005G095300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-MST2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79230 523 / 0 STR1, ATRDH1, ATMST1, ST1 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
AT1G16460 480 / 5e-172 STR2, ATMST2, ATRDH2 ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, rhodanese homologue 2 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G069300
[exp]
558 / 0 AT1G79230 575 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031753
[exp]
523 / 0 AT1G79230 553 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Lus10031177
[exp]
521 / 0 AT1G79230 550 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF00581 Rhodanese Rhodanese-like domain
Representative CDS sequence
>Potri.005G095300.9 pacid=42802711 polypeptide=Potri.005G095300.9.p locus=Potri.005G095300 ID=Potri.005G095300.9.v4.1 annot-version=v4.1
ATGGCTTCATCAGTAGTTGGGACAAGACCTAATTTCTCGACACAATCCTTATCTATGAATGAACCTGTTGTTTCTGTTGACTGGCTCCATGCGAACCTTA
GGGAACCTAACCTGAAGGTGTTGGATGCATCCTGGTACATGCCTGATGAGCAGAGGAATCCAATTCAAGAATATCAGGTTGCTCACATTCCTGGTGCCCT
TTTTTTTGATATAGATGGAATAGTAGATCGAACTATAAATTTGCCACACATGTTGCCATCGGAGGAAGCTTTTGCTGCTGCAGCTTCTGCTCTTGGTATT
GAGAATAAAGATGGAATAGTTGTTTACGATGGGAAGGGGATCTTTAGTGCTGCTCGTGTTTGGTGGATGTTTCTAGTCTTTGGGCATAGTAAAGTCTGGG
TGTTAGATGGAGGTCTTCCAAGATGGCGTGCTTCAGGGTATGATGTTGAATCTAGTGCTTCTAGTGATGCTATTTTGAAAGCTAGTGCTGCTAGTGAGGC
AATAGAGAAAGTATATCAGGGCCAGACAGTAGGACCAATCACATTTCAAGCAAAGTTTCAGCCATGTCTTGTCTGGACACTTGAGCAGATTAAACAAAAT
ATTGAAGACAAGACTCATCAACACATAGATGCACGTTCAAAGGGCAGGTTTGATGGTACTGCACCAGAACCTCGAAAGGGAATAAAAAGTGGGCATGTGC
CTGGCAGCAAGTGCATTCCATTTCCGCAGATGTTAGATGCTTCACAGACACTCTTACCAGCAGATGAGCTTAAAAAACGGTTTGATCAAGAAGGCATCTC
TCTGGAAAGTCCTGTTGTTGCTTCATGCGGGACTGGTGTAACTGCTTGTGTTCTTGTTCTGGGTCTCCATCGACTTGGAAAGCCGGATGTTGCGGTCTAT
GATGGATCTTGGACCGAATGGGCAGACCGAGGGTGCTACTCCTGTTGA
AA sequence
>Potri.005G095300.9 pacid=42802711 polypeptide=Potri.005G095300.9.p locus=Potri.005G095300 ID=Potri.005G095300.9.v4.1 annot-version=v4.1
MASSVVGTRPNFSTQSLSMNEPVVSVDWLHANLREPNLKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDIDGIVDRTINLPHMLPSEEAFAAAASALGI
ENKDGIVVYDGKGIFSAARVWWMFLVFGHSKVWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYQGQTVGPITFQAKFQPCLVWTLEQIKQN
IEDKTHQHIDARSKGRFDGTAPEPRKGIKSGHVPGSKCIPFPQMLDASQTLLPADELKKRFDQEGISLESPVVASCGTGVTACVLVLGLHRLGKPDVAVY
DGSWTEWADRGCYSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.005G095300
[exp]
0 1 Pt-MST2.1
AT3G24800 PRT1 proteolysis 1 (.1) Potri.001G049300
[exp]
4.58 0.9510
AT5G20230 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14,... Potri.006G067400
[exp]
6.00 0.9447
AT1G15660 CENP-C CENP-C HOMOLOGUE, centromere p... Potri.003G056600
[exp]
7.14 0.9404
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.015G079700
[exp]
7.74 0.9457
AT2G32560 F-box family protein (.1) Potri.009G068100
[exp]
8.48 0.9394
AT5G05690 CBB3, DWF3, CYP... DWARF 3, CYTOCHROME P450 90A1,... Potri.010G189800
[exp]
9.16 0.9475
AT5G51020 CAA33, CRL constitutive activator of AAA-... Potri.012G109800
[exp]
10.24 0.9411
AT5G22355 Cysteine/Histidine-rich C1 dom... Potri.016G057800
[exp]
12.24 0.9351
Potri.015G023750
[exp]
13.41 0.9320
AT2G34460 NAD(P)-binding Rossmann-fold s... Potri.011G079600
[exp]
16.12 0.9444

Potri.005G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.