Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TPS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 408 / 5e-137 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 367 / 4e-120 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 367 / 4e-120 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 348 / 1e-112 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 343 / 5e-111 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 340 / 1e-109 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20230 326 / 2e-104 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 319 / 4e-102 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 316 / 2e-100 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 308 / 2e-97 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085500 [exp] 570 / 0 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 560 / 0 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 510 / 2e-176 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 459 / 5e-157 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 442 / 5e-150 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 442 / 6e-150 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 439 / 5e-149 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.011G130666 [exp] 433 / 8e-149 AT5G23960 220 / 4e-66 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 432 / 2e-146 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002660 [exp] 572 / 0 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 562 / 0 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 538 / 0 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10008611 [exp] 536 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 516 / 5e-179 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10014724 [exp] 484 / 3e-166 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10008614 [exp] 478 / 3e-164 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 469 / 1e-160 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10031589 [exp] 422 / 2e-141 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10033643 [exp] 277 / 4e-85 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G095500.1 pacid=42804913 polypeptide=Potri.005G095500.1.p locus=Potri.005G095500 ID=Potri.005G095500.1.v4.1 annot-version=v4.1 ATGGCCCTTCAAGAATCAACCCCAAAAGCTCAATTTCGCCGAACAGCAGAGTTTCATCCTTCTGTATGGGGTGATTACTTCATCAACAAGACTCCTTGTG ATGAGATGCTATTCAGCGCTTGGATTAAGGAAGTTGAGGTGCTGAAAGAAGAAGTGAGGACCATGGTTACAAGCGCCACTCTAAAACCATCAGAAAAGCT GAAGTTGATGGACATTGTCCTTCGGCTAGGCATTGGTTACCATTTTGAAGGAGAAATTAATGACATAATAGAGCACGCATACAATACTTATCATGGCAAC AACTTCGACGATGACCTCTTTACAGTTGCTCTTCGATTTCGATTACTTAGACAGTATGGATACAATGTTTCAAGTGATATTTTCAACGAGTTCAAGGACG GAAAAGGCAACTTCAAGGACAATCTTATTGATGATGTGGAAGGCTTGCTAAGTTTATATGAAGCTTCTTTCCTCGGTGGTCATGGAGAAGATACGCTAGA TAAAGCTCTTTCCTTTTGCAAAACTCACCTCGAGTCCGCGGTTGCTCATCTGGTCTCTCCTCTTGCTGACAAAGTAAGTCATGCTTTGAAGCGGCCTCTC CTCAAAGGCGTACCAAAGCATGAGCAATGGCACCACATCCTTATCTACCAGCAAGACGAAGCTTGCACTGGAGCTGTTCTAAAGCTAGCAAAGTTGGATT TCAATGTAGTGCAAAAGTGCTACCAGGACGAGCTGAGGATTATCTCTAGGTGGTGGATAGACTTGGACTTTGCTACAAAGCTACCCTTTGCTCGAGACAG GGTGATTGAGTGCTTTTTTTGGGGACTGGGAGCATTTCTTGAGCCACAATTTGTACTTGCAAGGAGGTTCATAACAAAAGTACTTATATTTTTGTCCATA TTGGATGACATATATGATGTGCACGGAACGATTGAAGAACTTGAGCTTTTCACCGAAAAGATTGAAAGGTGGGATACTAGCATGGAAGATCTGCCAGATT ACATGAAATTGTTTTTTGAGGCATTAATTGGTTTCTTCGATGAAATTGAGCAAGAGACAGGGAAGGAAGGAAGACCATACTGCGTGCACTACTCTAGAGA AATGTTGAAGAATCAAGCAAGGGCCTACCTTATTGAAGCCAGATGGTTCAACCAAGACTGTGTTCCACAACTGGAGGAATACAGGCGTGGTGGTGTGTAT ACTTCTTGTTATCCTATGGCCGCAGTGGCATGGTTATGTGGGATGGCAGAAACAGGTTCAAAGGAGGTATTTGAGTGGATGTTAAAAAATCCTAAAATCG TGGTTGCCTCATCTGATATCGGTAGGCTCATGGATGACATTACATCCCATGAGTTTGAGCAAGAAAGAGGACATGTTGCGTCAGCTGTTGAGTGCTGCAT GAAGCAATATGGTGTTTCAAAGAAAGAAGCATATGACATGTTGAACAAGATGGTTGAAAGTGATTGGAAAGACATAAATGAGGAGCTTCTCAAGCCATCT ACTGTTCCTAGGCAAGTCTTGATACTTATGCTTAATCTAGCTCGTATCATAGACGTTGTATACAAGGATTATGATGGCTATACAGAGGCCAAGAACGCGA CGAAGGAAATGCTGACTGCTTTCCTCGTAGATCCCCTTCCAGTTGTAGCATGA
AA sequence Show only first row Show all	>Potri.005G095500.1 pacid=42804913 polypeptide=Potri.005G095500.1.p locus=Potri.005G095500 ID=Potri.005G095500.1.v4.1 annot-version=v4.1 MALQESTPKAQFRRTAEFHPSVWGDYFINKTPCDEMLFSAWIKEVEVLKEEVRTMVTSATLKPSEKLKLMDIVLRLGIGYHFEGEINDIIEHAYNTYHGN NFDDDLFTVALRFRLLRQYGYNVSSDIFNEFKDGKGNFKDNLIDDVEGLLSLYEASFLGGHGEDTLDKALSFCKTHLESAVAHLVSPLADKVSHALKRPL LKGVPKHEQWHHILIYQQDEACTGAVLKLAKLDFNVVQKCYQDELRIISRWWIDLDFATKLPFARDRVIECFFWGLGAFLEPQFVLARRFITKVLIFLSI LDDIYDVHGTIEELELFTEKIERWDTSMEDLPDYMKLFFEALIGFFDEIEQETGKEGRPYCVHYSREMLKNQARAYLIEARWFNQDCVPQLEEYRRGGVY TSCYPMAAVAWLCGMAETGSKEVFEWMLKNPKIVVASSDIGRLMDDITSHEFEQERGHVASAVECCMKQYGVSKKEAYDMLNKMVESDWKDINEELLKPS TVPRQVLILMLNLARIIDVVYKDYDGYTEAKNATKEMLTAFLVDPLPVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.005G095500 [exp]	0	1	TPS1.2
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.018G125900 [exp]	10.00	0.6679
AT1G04645			Plant self-incompatibility pro...		Potri.018G148630 [exp]	12.24	0.6679
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	19.26	0.6602
AT1G47670			Transmembrane amino acid trans...		Potri.004G181000 [exp]	22.31	0.6610
AT4G20820			FAD-binding Berberine family p...		Potri.001G461700 [exp]	29.66	0.6268
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.008G107001 [exp]	31.63	0.4754
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.010G217700 [exp]	33.40	0.5982	LBD11.1
AT4G37280			MRG family protein (.1)		Potri.002G122500 [exp]	34.95	0.6365
AT2G37530			unknown protein		Potri.006G083800 [exp]	35.70	0.6651
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.014G106700 [exp]	36.27	0.6365

Compare expression of checked genes

Potri.005G095500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.