Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80600 636 / 0 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 197 / 2e-57 DELTA-OAT ornithine-delta-aminotransferase (.1) AT2G38400 190 / 8e-55 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT4G39660 181 / 2e-51 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 173 / 1e-48 PYD4 PYRIMIDINE 4 (.1) AT3G22200 144 / 1e-37 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 131 / 2e-33 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 121 / 8e-30 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 88 / 3e-18 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053500 [exp] 681 / 0 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 191 / 3e-55 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G132200 [exp] 181 / 2e-51 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.006G106800 [exp] 178 / 2e-50 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.007G085600 [exp] 176 / 2e-49 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.016G018500 [exp] 142 / 6e-37 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 142 / 6e-37 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.015G101100 [exp] 106 / 1e-24 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 75 / 2e-15 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008025 [exp] 671 / 0 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 650 / 0 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 211 / 1e-62 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 211 / 1e-62 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031775 [exp] 197 / 1e-61 AT1G80600 195 / 3e-61 HOPW1-1-interacting 1 (.1) Lus10025262 [exp] 202 / 2e-59 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10029922 [exp] 177 / 8e-50 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 174 / 5e-49 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 159 / 2e-43 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10003810 [exp] 137 / 2e-35 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.005G095800.1 pacid=42802380 polypeptide=Potri.005G095800.1.p locus=Potri.005G095800 ID=Potri.005G095800.1.v4.1 annot-version=v4.1 ATGAATTCTATTCACATTTCATCAAATCCCATTGTTTCTCACTCACTCACTCACCACCGTTGGCTCTCCACTTCACACAAACTCTATCCCCAAGTGATCA AAATCAACGGCAGAAAATCACTGACAACATCATGCCTCAATGTAGACGTGAATGCGCCAGATATTTCAAGAAAAGTAACAGCCCAAAACAGCAAAGAAGT GATAGAGCTAGAAGGGAAGGTAATGGTAGGGACTTACGGGAGAGCGCCTGTTGTTTTGGTGAGTGGCAAAGGTTGTAAATTGTATGATGTTGAAGGGCGT GAGTATTTGGACATGACTTCAGGGATTGCTGTTAATGCTTTAGGACACTGTGATCCTGATTGGGTTAAGGCTGTTGCTGATCAAGCTCATGTTTTGACTC ATGTTAGCAATGTCTACTATTCTGTTCCTCAGGTAGAGCTTGCTAAGCGTCTAGTGGATTGCTCGTTTGCTGATCGAGTGTTTTTTACAAATTCTGGAGC AGAGGCAAATGAAGCAGCTATCAAATTTGCTAGGAAGTTCCAAAGACACTCAAACCCTGACGTGAAAGACCCAGCTACAGAATTCATATCTTTCACTAAT AGCTTCCATGGCAGGACAATGGGTGCACTTGCTTTAACAAGCAAAGAACAATATAGAACACCTTTTGAACCTGTTATGCCTGGAGTCACTTTTGTAGAAT ATGGAAATATAAAGGCTACACAAGAATTAATTCGGCGTGGGAAAACTGCTGCAGTTTTTGTGGAACCCATCCAAGGTGAAGGAGGCATTTATAGTGCAAC AAAGGCGTTTTTGGAGTTCTTGCGAACTGCTTGTGATGATGCTGGGGCACTCCTGGTGTTTGATGAGGTGCAATGTGGTTTAGGTAGAACTGGATACCTC TGGGCCCATGAAGCTTATGGGATCTTCCCAGATATAATGACACTCGCAAAACCACTTGCTGGAGGTCTACCTATTGGTGCCGCTTTGGTGACTGAAAGAG TTGCTTCATCTATAAATTATGGTGACCATGGAAGTACATTTGCTGGTGGTTCCCTTGTTTGCAATGCAGCCCTTACTGTTCTGGAGAAAATCTCAAAACC AGAATTTTTGTCTAGTGTATCTAAGAAAGGGCTGTACTTAAAAGAAATTTTGCAGCAAAAGCTTGGCAGGAACTCACATGTGAAAGAAATCCGAGGTCTT GGGTTTATTATTGGAATTGAGTTGGATGTCCCAGCCTCACCACTAGTTTCTGCTTGTCGAAATTCTGGCCTTCTTGTGTTAACTGCTGGAAAAGGAAATG TCGTGAGACTTGTGCCTCCATTGACTGTAACTAAGCAGGAACTTCGTCTTGCATCTGATATTCTACAAAATGCAATGTCTGTACTTGATGAGAATAATTC AGAGTAG
AA sequence Show only first row Show all	>Potri.005G095800.1 pacid=42802380 polypeptide=Potri.005G095800.1.p locus=Potri.005G095800 ID=Potri.005G095800.1.v4.1 annot-version=v4.1 MNSIHISSNPIVSHSLTHHRWLSTSHKLYPQVIKINGRKSLTTSCLNVDVNAPDISRKVTAQNSKEVIELEGKVMVGTYGRAPVVLVSGKGCKLYDVEGR EYLDMTSGIAVNALGHCDPDWVKAVADQAHVLTHVSNVYYSVPQVELAKRLVDCSFADRVFFTNSGAEANEAAIKFARKFQRHSNPDVKDPATEFISFTN SFHGRTMGALALTSKEQYRTPFEPVMPGVTFVEYGNIKATQELIRRGKTAAVFVEPIQGEGGIYSATKAFLEFLRTACDDAGALLVFDEVQCGLGRTGYL WAHEAYGIFPDIMTLAKPLAGGLPIGAALVTERVASSINYGDHGSTFAGGSLVCNAALTVLEKISKPEFLSSVSKKGLYLKEILQQKLGRNSHVKEIRGL GFIIGIELDVPASPLVSACRNSGLLVLTAGKGNVVRLVPPLTVTKQELRLASDILQNAMSVLDENNSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	0	1
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	7.00	0.8660
AT3G06868			unknown protein		Potri.008G220700 [exp]	7.48	0.8750
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.012G106000 [exp]	11.61	0.8717	ICE1.2
AT5G42765			unknown protein		Potri.014G196800 [exp]	15.00	0.8788
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	20.37	0.8685
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	29.39	0.8491	Pt-BRI1.1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	29.84	0.8615
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	32.58	0.8481	IAA14.1
AT5G10770			Eukaryotic aspartyl protease f...		Potri.016G000600 [exp]	36.05	0.8163
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	36.33	0.8263

Compare expression of checked genes

Potri.005G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.