Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79160 209 / 5e-68 unknown protein AT1G16500 191 / 3e-60 unknown protein AT5G06270 42 / 3e-05 unknown protein AT3G11600 41 / 8e-05 unknown protein AT5G22270 40 / 0.0002 BIN4 ? unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067300 [exp] 303 / 6e-105 AT1G79160 164 / 3e-50 unknown protein Potri.011G153600 [exp] 126 / 8e-36 AT1G79160 124 / 6e-35 unknown protein Potri.001G446800 [exp] 118 / 1e-32 AT1G79160 113 / 7e-31 unknown protein Potri.004G200300 [exp] 46 / 1e-06 AT5G06270 71 / 7e-17 unknown protein Potri.009G161400 [exp] 44 / 1e-05 AT5G06270 91 / 9e-25 unknown protein Potri.006G206000 [exp] 41 / 0.0001 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 39 / 0.0005 AT5G06270 115 / 2e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031179 [exp] 200 / 3e-64 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 188 / 2e-59 AT1G79160 201 / 1e-64 unknown protein Lus10016982 [exp] 42 / 4e-05 AT5G06270 122 / 4e-37 unknown protein Lus10021305 [exp] 42 / 4e-05 AT5G06270 122 / 8e-37 unknown protein Lus10043404 [exp] 42 / 5e-05 AT3G11600 78 / 1e-19 unknown protein Lus10034181 [exp] 42 / 6e-05 AT3G11600 87 / 3e-23 unknown protein Lus10004209 [exp] 41 / 0.0001 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 41 / 0.0001 AT5G06270 100 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G096800.1 pacid=42803392 polypeptide=Potri.005G096800.1.p locus=Potri.005G096800 ID=Potri.005G096800.1.v4.1 annot-version=v4.1 ATGGCAGCTGAGGTGAGTTCTCTGGTAAGGCTTTTGAGTGGATACACGGATGATAGGAACGTTGTGAGTGAACCTGGAGGGGCAAAATCAACAACTTTGA TCACTAGGGACTTGCTTGGCGGCGGCGGCGGCGGCGGTGATTCTGTAGAGAGCGAATCTCAAGAATTGGACCTCGATTTGCAAGTGCCAAGTGGGTGGGA AAAGCGCCTAGACTTGAAGTCAGGAAAGGTTTACTTGCAAAGATGCAACTCTTCAAGCTCACCCTCATCATCCTCAGATTACAGGAACCAAACAAATCAA ACAGTGGCAAAGCTTCAAGATTTGAATTTTCCACCTTCGCCTTCCAAGATTACACTGAACCTTTTCGATGAAGGTAACTTGGAACTGAACTTCGTCTCAT CACCAATGTCAAGCAATTACCAAAGTGTTTGCACTCTGGATAGAGTAAAATCCGCGCTTGAAAGAGCAGAGAAAGAACCGGGCAGGAAGCAATCCTCTTC GCTATGGAAATCATCATCGTCGCCGCCTTATTCATCATCATCGTCTTCAGTGAGAGACATTCAAGAGGAAGAAAATGAAGAGAAGCTACTAGAGGCATCC CCGGTTGCGGCAGGATGCCCCGGTTGCTTATCCTACGTTTTAATAACGAAGATTAATCCAAGATGTCCTAGATGCAATTCAGTTGTTCTAATGCCAACGG TGAAGAAGCCTATGATTGATCTTAACATATCAATTTGA
AA sequence Show only first row Show all	>Potri.005G096800.1 pacid=42803392 polypeptide=Potri.005G096800.1.p locus=Potri.005G096800 ID=Potri.005G096800.1.v4.1 annot-version=v4.1 MAAEVSSLVRLLSGYTDDRNVVSEPGGAKSTTLITRDLLGGGGGGGDSVESESQELDLDLQVPSGWEKRLDLKSGKVYLQRCNSSSSPSSSSDYRNQTNQ TVAKLQDLNFPPSPSKITLNLFDEGNLELNFVSSPMSSNYQSVCTLDRVKSALERAEKEPGRKQSSSLWKSSSSPPYSSSSSSVRDIQEEENEEKLLEAS PVAAGCPGCLSYVLITKINPRCPRCNSVVLMPTVKKPMIDLNISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79160			unknown protein		Potri.005G096800 [exp]	0	1
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	5.00	0.7348
AT3G51510			unknown protein		Potri.011G146200 [exp]	10.58	0.7137
AT3G58730			vacuolar ATP synthase subunit ...		Potri.001G331800 [exp]	17.29	0.7041
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	19.59	0.7259
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	22.09	0.7358	LPD1,Pt-LPD.1
AT3G15090			GroES-like zinc-binding alcoho...		Potri.001G373200 [exp]	31.81	0.7194
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	41.83	0.7268	RPT2.3
AT2G29900		PS2	Presenilin-2 (.1)		Potri.015G058301 [exp]	59.79	0.6594
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	75.05	0.6619
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.010G164500 [exp]	76.78	0.6343

Compare expression of checked genes

Potri.005G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.