Plant FIBer expression Database

Potri.005G096900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79150 849 / 0 binding (.1)
AT2G17250 46 / 0.0001 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034234
[exp]
901 / 0 AT1G79150 867 / 0.0 binding (.1)
Lus10029032
[exp]
879 / 0 AT1G79150 836 / 0.0 binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03914 CBF CBF/Mak21 family
PF07540 NOC3p Nucleolar complex-associated protein
Representative CDS sequence
>Potri.005G096900.4 pacid=42803099 polypeptide=Potri.005G096900.4.p locus=Potri.005G096900 ID=Potri.005G096900.4.v4.1 annot-version=v4.1
ATGGGAAAGAACAAGCAAAAGCAGAAAGTAATTCTCCCACCGGAACTCCCTCCGGAAGTACCAGACGATGAAATCGAAGTCTCCGACGAGGACTTACAAT
TCGTCAACGAGAATCTCGATTACGCCGGCTTCGTTGCTGGCCTAGACACCACTTCCATCACCAAGCATGTGACGCGCGTGGCGGATTTGAAAGAAGATGC
ATTGGAGAGATTGTACGAGAGGCGGTTACAGAAGAAGAAATTGAAAGAGAAAGAAGAGGAGGAGAAGAAGAGCAGAGTGGAAGTCGATCGTGTTGATGCG
CTTCCGGTGAAGAGTTTGGATGGACAAGTTTATTACCGGACGCTGGCGGAGAAAAAAGGCGGAGATGGGGGGGAGGAGGAGGATGGTGGCGGGGATAAGG
GGATAGTGAGGTTGACAAAAACAGAGAGGAGGGCGAAATTGAAGAAGAGTAAGAAAGAGGCGAAGAAATTAGGGAAGCAAGTGGAGAATACTGAACAAGT
GGAAGCAACGCCGCAGGCGGCTGTGCTGGCTGAGGTGAAAGAAGATCTCACAGCTGAGGCAACATTTGAAACTAAGAAACGTAAACTTGCAGAGCTTGGA
GTAGCTTTGCTGGCAGACCCAGAGTCCAATATAAAATCTCTGAAAGAGATGCTACAGTTTTGTCTTGATGATGATGATGCTATTATTAAACTTGGACTGC
TATCCTTGTTGGCTGTTTTTAAAGATATTATTCCAGGCTATCGGATTAGGCTTCCCACTGAAAAAGAGCTAGAAATGAAAGTTTCCAAGGAAGTTAAGAA
GATGCGATTCTATGAATCAACACTTTTATCTGTGTACAAGGCATACTTGCAAAAGCTGGTGCTGTTAGAAAAAAAGTCCAAGTTTCAGCATGTGGCTGTT
CGCTGCATTTGTACTTTGCTTGAAGCTGTTCCACACTTCAACTTCCGGGAGAGCTTGTTAGCTGCTGTTGTAAAAAACATAGGCTCCCAAGATGATGTTA
TAAGGAAGCTTTCTTGTTCTGCTATTAAGTCACTTTTTGTCAATGAGGGAAAACATGGTGGTGCTGCTTCTGTTGAGGCTGTTGAATTGATAGCTGATCA
TGTTAAGGCTCTCAATTGTCAATTGCATCCTGACTCTGTTGAGGTATTCATCTCATTGTCATTTCATGAAGATCTTAGGAAGCCTGAAGAACCAGACAAA
CAAAGCAAGGTTAAATATAAGAAAAATAGAAAGAGAAAGAATGTTGAGGAGCCAAGTCAACTGCAAGAAAGTGACAGAAAAAGAAGTAAGAAAGAATTGA
CGGCAAAGATGAGAGAAGAGGTTACTGCAGATTATAAATCTGCTGTTTTTACCCCAGATGTGAAGGAGCAGAGGAAGATGCAGTCAGATATGCTTTCCGC
TGTATTTGAAACATATTTCCGCATCTTGAAGCATGTCATGCAGTCAACCGCAGCTAGTTCTCAAGCAAATGGTACTTTAGTTGCTGGTGAATCTGGGGCC
CACCCGCTGCTTGCTCCATGTCTGAATGGATTAGGAAAGTTCACTCATTTCATTGACCTAGATTACATCGGAGACCTTATGAACTATCTGAAAAAGCTTG
CTGCTGGTGGTAGCAGCTCTGACAATTCATCTGAGAAATGTGCAAAGGGTCTGACTGTATCTGAACGCCTCCAGTGCTGCATTGTCGCCTTTAAAGTAAT
GAGGAGCAATCTTGATGCCCTGAATGTGGATTTACAGGGATTCTTTGTGCAGTTGTACAACCTCATACTTGAGTACCGTCCTGGAAGAGATCAGGGTGAA
GTGCTAGTGGAAGCTTTGAAGATTATGCTTTTTGAAGACCGACAGCATGACATGCAAAAGGCAGCTGCATTTGTAAAGCGATTGGCCACATTTTCATTAT
GCTTTGGATCAGCGGAATCCATGGCTGCTTTGGTGACTTTAAAGCAACTTCTTCAGAAAAATGTCAAATGCCGGAATCTCTTGGAAAATGATGCAGGAGG
CGGCTCTGTTTCTGGCTCCATTGCAAAGTATCAGCCATATGCAACAGATCCTAATTTAAGTGGGGCGCTTGCTTCCGTTCTCTGGGAACTCAACCTTCTG
TGCAAGCATTATCAGCCAGCCATTTCAACAATTGCTTCAAGCATTTCAACCATGAGCACTTCTCATAACCAAGTTTATCTCGCCTCCACTTCTCCTCAAC
AAGCTTTTAGGGATTTGTCACTTGAACAAGAGTCATTCAACCCAAAACCCGATTTGAGAAAATCAAATAACAAGAGGAAAAGAGGAAGTGGGCCTTCCAG
ATTGGCTAGTGTAGAAGAGAACGTGAACAGCACAGGTTCACTCGACGAAGATGAGTTGAGAAAGAAACTTTCTGATCATTTCAGTCTTCTTCGTGACTTT
AAGGAGAGCGAGAAATTGAGGACTGAATTAGATCGTACAACGTCAGCCTTGCAGTTGTATGAAGAATATAAGAAGCAAAAGAAAAAAACCGCTAGACGAG
GTATCAAGATTGGAGGGAAGGGAGCTTGA
AA sequence
>Potri.005G096900.4 pacid=42803099 polypeptide=Potri.005G096900.4.p locus=Potri.005G096900 ID=Potri.005G096900.4.v4.1 annot-version=v4.1
MGKNKQKQKVILPPELPPEVPDDEIEVSDEDLQFVNENLDYAGFVAGLDTTSITKHVTRVADLKEDALERLYERRLQKKKLKEKEEEEKKSRVEVDRVDA
LPVKSLDGQVYYRTLAEKKGGDGGEEEDGGGDKGIVRLTKTERRAKLKKSKKEAKKLGKQVENTEQVEATPQAAVLAEVKEDLTAEATFETKKRKLAELG
VALLADPESNIKSLKEMLQFCLDDDDAIIKLGLLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSVYKAYLQKLVLLEKKSKFQHVAV
RCICTLLEAVPHFNFRESLLAAVVKNIGSQDDVIRKLSCSAIKSLFVNEGKHGGAASVEAVELIADHVKALNCQLHPDSVEVFISLSFHEDLRKPEEPDK
QSKVKYKKNRKRKNVEEPSQLQESDRKRSKKELTAKMREEVTADYKSAVFTPDVKEQRKMQSDMLSAVFETYFRILKHVMQSTAASSQANGTLVAGESGA
HPLLAPCLNGLGKFTHFIDLDYIGDLMNYLKKLAAGGSSSDNSSEKCAKGLTVSERLQCCIVAFKVMRSNLDALNVDLQGFFVQLYNLILEYRPGRDQGE
VLVEALKIMLFEDRQHDMQKAAAFVKRLATFSLCFGSAESMAALVTLKQLLQKNVKCRNLLENDAGGGSVSGSIAKYQPYATDPNLSGALASVLWELNLL
CKHYQPAISTIASSISTMSTSHNQVYLASTSPQQAFRDLSLEQESFNPKPDLRKSNNKRKRGSGPSRLASVEENVNSTGSLDEDELRKKLSDHFSLLRDF
KESEKLRTELDRTTSALQLYEEYKKQKKKTARRGIKIGGKGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79150 binding (.1) Potri.005G096900
[exp]
0 1
AT4G16630 DEA(D/H)-box RNA helicase fami... Potri.005G241300
[exp]
1.41 0.9135
AT2G18220 Noc2p family (.1) Potri.001G012800
[exp]
1.73 0.9250
AT4G04940 transducin family protein / WD... Potri.006G078900
[exp]
3.00 0.9027
AT3G12270 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN A... Potri.001G030200
[exp]
3.46 0.8869
AT5G11240 transducin family protein / WD... Potri.010G005400
[exp]
3.87 0.8909
AT2G43650 EMB2777 EMBRYO DEFECTIVE 2777, Sas10/U... Potri.013G125800
[exp]
5.29 0.8968
AT1G06720 P-loop containing nucleoside t... Potri.017G017700
[exp]
6.92 0.8643
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
7.07 0.8769
AT5G48240 unknown protein Potri.014G170500
[exp]
7.93 0.8466
AT3G57660 NRPA1 nuclear RNA polymerase A1 (.1) Potri.006G055300
[exp]
9.16 0.8851

Potri.005G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.