Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 391 / 4e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37790 283 / 8e-95 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 272 / 4e-90 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT3G53880 262 / 3e-86 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G62420 261 / 8e-86 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 258 / 5e-85 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT5G01670 234 / 1e-75 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 201 / 8e-63 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 199 / 1e-61 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193100 [exp] 455 / 4e-162 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G125400 [exp] 278 / 2e-92 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.016G102032 [exp] 270 / 2e-89 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 252 / 3e-82 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 245 / 8e-80 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 243 / 5e-79 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.012G039901 [exp] 234 / 4e-77 AT1G59960 201 / 1e-64 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.017G070600 [exp] 236 / 2e-76 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.010G036801 [exp] 196 / 1e-62 AT1G59960 187 / 2e-59 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010720 [exp] 449 / 1e-159 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 446 / 1e-158 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 343 / 5e-118 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10011056 [exp] 332 / 1e-113 AT1G59960 325 / 8e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 278 / 2e-92 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 274 / 6e-91 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031162 [exp] 271 / 7e-90 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010885 [exp] 265 / 2e-87 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010884 [exp] 260 / 1e-85 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 248 / 7e-81 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.005G097000.3 pacid=42802390 polypeptide=Potri.005G097000.3.p locus=Potri.005G097000 ID=Potri.005G097000.3.v4.1 annot-version=v4.1 ATGGGAATTAATATTCCAACCTCCACCCTCCGTTCAACCGATAGAACCATACCTCTTTTAGGTTATGGAACTGCCGAGTATCCCTTTGGTGCTTCCATTG AAACCATGAAAGAGTCCATTCTCCATGCAATAGAACTTGGTTACCGGCACTTTGATTCAGCTTCTCTTTACCAGTCTGAAGTACCTCTAGGTGAAGCAAT ATCAGATGCTTTAACATTAGGTTTAATCAAGTCTCGAGATGAGCTCTTTATCACTTCCAAGCTTTGGTGTAGTGATGGACATAAAGATCTTGTGCTCCCT GCGTTACAAAAGACACTCGAGAATCTTCAGCTAGAATATCTAGATCTGTATTTAATTCACTGGCCTGTGAGCTCAAAACCAGGAGAATATGTGTTTCCAG TGAAGGAGAAGGACCTTCTTCCAATGGATTTCCAGTCTGTGTGGGAAGCTATGGAGGAGTGTCAAAAGCTTGGCCTGGCAAAATCCATTGGTGTGAGCAA TTTTTCATGCAAGAAGCTTGAGAACCTGCTTGCCACGGCAAAGATTCCTCCAGCAGTCAATCAAGTGGAGATAAGCCCTCTTTGGCAGCAAAAGAGGATA AGAGAGTTTTGTGAGGAAAAAGGTATACACGTTACCGCTTACTCTCCGCTGGGAGCGAAAGGAATGTTATGGGGCACAAACAACGTCATGGAGTGCCAAG TGCTGAAAGAGATTGCTGCTGCTAGAGGAAAAAGTATAGCGCAGATTTGTCTCAGATGGGTACATGAACAAGGTGTAAGCGTGCTTGTGAAGAGCTTCAA CAAAGAGAGGATCAAACAAAACCTGGACATATTTGACTGGAAATTGAGCCAAGAAGATTTGAAAAGGATGAGTCAAATCCCGCAACAAAGAGCATGCGTG GCAGCTGCATTCGTCTCCGAGAAAGGCCCTTACAAATCGGTTGACGAGTTTTGGGATGGAGAGATTTAA
AA sequence Show only first row Show all	>Potri.005G097000.3 pacid=42802390 polypeptide=Potri.005G097000.3.p locus=Potri.005G097000 ID=Potri.005G097000.3.v4.1 annot-version=v4.1 MGINIPTSTLRSTDRTIPLLGYGTAEYPFGASIETMKESILHAIELGYRHFDSASLYQSEVPLGEAISDALTLGLIKSRDELFITSKLWCSDGHKDLVLP ALQKTLENLQLEYLDLYLIHWPVSSKPGEYVFPVKEKDLLPMDFQSVWEAMEECQKLGLAKSIGVSNFSCKKLENLLATAKIPPAVNQVEISPLWQQKRI REFCEEKGIHVTAYSPLGAKGMLWGTNNVMECQVLKEIAAARGKSIAQICLRWVHEQGVSVLVKSFNKERIKQNLDIFDWKLSQEDLKRMSQIPQQRACV AAAFVSEKGPYKSVDEFWDGEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.005G097000 [exp]	0	1
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Potri.019G042600 [exp]	4.47	0.9804
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	5.47	0.9725
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.005G209500 [exp]	7.14	0.9767
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.018G097500 [exp]	7.74	0.9631
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.008G173800 [exp]	9.38	0.9694	3,Pt-AMT1.5
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G117200 [exp]	10.53	0.9569
AT5G55570			unknown protein		Potri.011G085700 [exp]	11.13	0.9731
AT5G07020			proline-rich family protein (....		Potri.001G032200 [exp]	11.74	0.9608
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.002G196100 [exp]	12.68	0.9723
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.002G062100 [exp]	12.96	0.9723

Compare expression of checked genes

Potri.005G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.