Plant FIBer expression Database

Potri.005G097250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G095800
[exp]
0 / 1 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031775
[exp]
40 / 3e-05 AT1G80600 195 / 3e-61 HOPW1-1-interacting 1 (.1)
Lus10008025
[exp]
39 / 6e-05 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1)
Lus10031196
[exp]
39 / 9e-05 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1)
PFAM info
Representative CDS sequence
>Potri.005G097250.1 pacid=42805210 polypeptide=Potri.005G097250.1.p locus=Potri.005G097250 ID=Potri.005G097250.1.v4.1 annot-version=v4.1
ATGAACCTGCATCCTACTTGTAGATGCATGTGGAAATTCTGCCCTTATTGTATTAACTGCTGGAAAAGGAATCTAGTGAAACTTTTGCCTCCATTGATAG
CAACAGATCAGGATGCTGGCCTTGGAGCTGATATTTTACAAATTGTCATGTCTGTACTCAATGGAAATAATTCAAAGCTAGAACAGGTGAAGAAATTAAA
TCCTGCAGGCTTCAGCTGTAGGTAA
AA sequence
>Potri.005G097250.1 pacid=42805210 polypeptide=Potri.005G097250.1.p locus=Potri.005G097250 ID=Potri.005G097250.1.v4.1 annot-version=v4.1
MNLHPTCRCMWKFCPYCINCWKRNLVKLLPPLIATDQDAGLGADILQIVMSVLNGNNSKLEQVKKLNPAGFSCR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G097250
[exp]
0 1
AT5G16640 Pentatricopeptide repeat (PPR)... Potri.005G097200
[exp]
5.00 0.7779
AT4G31980 unknown protein Potri.001G017900
[exp]
21.79 0.7560
AT4G40045 unknown protein Potri.008G025700
[exp]
24.45 0.7760
AT5G04000 unknown protein Potri.016G044001
[exp]
27.76 0.7700
Potri.010G194650
[exp]
36.63 0.7188
AT5G19485 transferases;nucleotidyltransf... Potri.009G066400
[exp]
51.78 0.7462
AT5G55090 MAPKKK15 mitogen-activated protein kina... Potri.003G130000
[exp]
55.15 0.7395
AT4G00350 MATE efflux family protein (.1... Potri.002G161200
[exp]
84.58 0.6418
AT2G38130 ATMAK3 Acyl-CoA N-acyltransferases (N... Potri.001G435300
[exp]
120.94 0.6568
AT3G57710 Protein kinase superfamily pro... Potri.013G020100
[exp]
165.10 0.6530

Potri.005G097250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.