Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53720 667 / 0 ATCYP59, CYP59 cyclophilin 59 (.1) AT1G53780 193 / 6e-54 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT2G36130 113 / 5e-29 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 103 / 3e-23 ATPUB49 plant U-box 49 (.1) AT1G01940 97 / 3e-23 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 103 / 6e-23 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT4G33060 95 / 1e-20 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 84 / 5e-18 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G21130 74 / 3e-15 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 73 / 8e-15 ROC1 rotamase CYP 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067000 [exp] 199 / 1e-59 AT1G53720 137 / 3e-37 cyclophilin 59 (.1) Potri.016G075600 [exp] 112 / 6e-29 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 100 / 3e-24 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 103 / 5e-23 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.014G071600 [exp] 95 / 1e-22 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 100 / 4e-22 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.018G061700 [exp] 82 / 4e-16 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G185200 [exp] 76 / 6e-15 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.005G215800 [exp] 77 / 1e-14 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031194 [exp] 649 / 0 AT1G53720 640 / 0.0 cyclophilin 59 (.1) Lus10031772 [exp] 643 / 0 AT1G53720 639 / 0.0 cyclophilin 59 (.1) Lus10021335 [exp] 100 / 3e-24 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 107 / 4e-24 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 106 / 5e-24 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10020573 [exp] 103 / 6e-23 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 103 / 6e-23 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 95 / 3e-22 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009237 [exp] 94 / 4e-22 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018746 [exp] 86 / 2e-17 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.005G097500.1 pacid=42803794 polypeptide=Potri.005G097500.1.p locus=Potri.005G097500 ID=Potri.005G097500.1.v4.1 annot-version=v4.1 ATGTCAGTGCTAATAGTTACAAGTTTAGGTGACATAGTGGTGGATTTATACGCTGACAAGTGCCCGTTAACCTGCAAAAACTTCTTGAAACTTTGCAAGA TTAAGTATTATAATGGTTGCCTATTTCACACAGTCCAGAAGGATTTTACTGCACAGACTGGTGACCCTACTGGTACTGGAGCTGGTGGCGATTCGGTCTA CAAATTTCTATATGGCGATCAGGCTCGTTTTTTTGGCGATGAAATTCATCTTGATTTGAAACATTCAAAGATGGGAACTGTTGCAATGGCTAGTGCTGGA GAAAATTTGAATGCTTCTCAGTTTTATTTCACTCTGCGTGATGATCTGGACTATCTTGATGGGAAGCACACTGTATTTGGAGAGATAGCAGAAGGGCTTG AAACTTTAACGAGGATAAATGAAGCTTATGTGGATGAAAAGAATAGACCTTTTAAAAATATCAGAATCAAACACGCATATATACTTGATGATCCTTTTGA TGATCCTTCCCAACTGGCAGAATTGATCCCTGAAGCTTCTCCAGAAGGAAAACCAAAGGATGAGGTTGACGGTGACGTGCGGCTCGAAGATGATTGGGTG CCCATGGATGAGCAATTAGGCACAGCAGAGCTAGAAGAGGTTCTTCGGGCAAAGGAAGCACATTCTAGTGCAGTTGTGCTTGAGAGTATTGGGGATATTC CTGAGGCTGAGACAAAGCCTCCTGATAATGTCCTATTTGTTTGTAAACTAAATCCAGTTACTGAGGATGAGGACTTGCATACAATCTTTTCACGCTTTGG AACTGTTATATCGGCTGATATAATTCGTGATTATAAGACTGGAGACAGCTTATGTTATGCATTTATAGAGTTTGAGACCAAAGAGGCATGCGAGCTAGCA TATTTTAAGATGGATAATGCTTTGATTGATGATAGAAGGATTCATGTGGATTTTAGTCAGAGTGTTGCAAAACTATGGTCTCAATTCAGGCGAAAAGACA ACCAACCGGGTAAAGGAAGAGGTTGCTTCAAATGTGGTGCTCTTGATCATATGGCGAAGGATTGCACTGGTGATCCTGCTAACAAACATCAACCTTCAAA ATACATCCTGAAGGACGATAATATGCAGCGTGGTGGAGATAATAATTCGAGATATGAAATGGTATTTGATGGAGACACTCCAGAAAGTCCAAGACAGGGA AAGAGACATGGACACCGTGATCCAGATTACCAAATTGACAGAGAAAAGAAAGATGGAAAAGAGAGGTACAGGCAGAGTGACAGAGATAGAGGACACAGAC AGGACACTCCAGATTACCAAATTGACAGAGAAAAGAAAGATGGAAAAGAGAGGTACAGGCAGAGTGACAGAGATAGAGGACACAGACAGGACACTCGGTA CCCTGAAAGTAAAGGAGGGAGTCGATATCCTGAGGAGCGACTTGATAAAGAAAAGTATATGGATAGAAGAAAAGACCGAGACGATCGAGATTACAGAAAG AGAAGTTCAGATAGTCAAAGAGATTATGATAGCCATAAAGACCATCGAGATTACAGAAAGAGAACTTCAGATAGTCATAGAGATCATGATGGCCATAAAG GCAACAGGGATGAACGAGAACATAGACGTCGAAGTGCAGAAAATGATGATGATCCTGAATATGATCGAGATCGGAGGAACAGAGATGACAAAAGGAGTCG AGCTGTAAGATGA
AA sequence Show only first row Show all	>Potri.005G097500.1 pacid=42803794 polypeptide=Potri.005G097500.1.p locus=Potri.005G097500 ID=Potri.005G097500.1.v4.1 annot-version=v4.1 MSVLIVTSLGDIVVDLYADKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGAGGDSVYKFLYGDQARFFGDEIHLDLKHSKMGTVAMASAG ENLNASQFYFTLRDDLDYLDGKHTVFGEIAEGLETLTRINEAYVDEKNRPFKNIRIKHAYILDDPFDDPSQLAELIPEASPEGKPKDEVDGDVRLEDDWV PMDEQLGTAELEEVLRAKEAHSSAVVLESIGDIPEAETKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVISADIIRDYKTGDSLCYAFIEFETKEACELA YFKMDNALIDDRRIHVDFSQSVAKLWSQFRRKDNQPGKGRGCFKCGALDHMAKDCTGDPANKHQPSKYILKDDNMQRGGDNNSRYEMVFDGDTPESPRQG KRHGHRDPDYQIDREKKDGKERYRQSDRDRGHRQDTPDYQIDREKKDGKERYRQSDRDRGHRQDTRYPESKGGSRYPEERLDKEKYMDRRKDRDDRDYRK RSSDSQRDYDSHKDHRDYRKRTSDSHRDHDGHKGNRDEREHRRRSAENDDDPEYDRDRRNRDDKRSRAVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.005G097500 [exp]	0	1
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.005G010900 [exp]	10.39	0.7262
AT1G71490			Tetratricopeptide repeat (TPR)...		Potri.019G074700 [exp]	12.48	0.7370
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	14.83	0.7506
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	24.69	0.7226
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.001G465500 [exp]	25.45	0.7090	HEN902,HEN1.2
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.010G122500 [exp]	30.19	0.7240
AT1G31240			Bromodomain transcription fact...		Potri.015G118200 [exp]	48.19	0.6688
AT5G49960			unknown protein		Potri.003G008800 [exp]	49.29	0.6818
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.001G158200 [exp]	57.00	0.6667
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	57.12	0.6829

Compare expression of checked genes

Potri.005G097500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.