Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16520 339 / 4e-116 unknown protein AT1G56080 272 / 6e-90 unknown protein AT4G15545 181 / 4e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066900 [exp] 459 / 2e-163 AT1G16520 383 / 2e-133 unknown protein Potri.010G027400 [exp] 180 / 7e-54 AT4G15545 355 / 2e-122 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031771 [exp] 348 / 4e-119 AT1G16520 400 / 1e-139 unknown protein Lus10031193 [exp] 286 / 1e-94 AT1G16520 352 / 5e-121 unknown protein Lus10034001 [exp] 179 / 2e-53 AT4G15545 382 / 5e-133 unknown protein Lus10012775 [exp] 178 / 4e-53 AT4G15545 383 / 2e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G097600.4 pacid=42802366 polypeptide=Potri.005G097600.4.p locus=Potri.005G097600 ID=Potri.005G097600.4.v4.1 annot-version=v4.1 ATGTCACAGCATACAACAGGAGGGACTGATTTTAGCTTACCAGATGAGATCTTAGCAGTGATTCCATTGGACCCATATGAACAACTGGATCTGGCAAGGA AGATTACATCCATGGCAATTGCATCCCGCGTCTCCAATTTGGAATCTGAGATGGGTCGCATGAAGCAGAAGATGTTAGAGAAGGATCATATTATTTTTGA GCTTCAAGAGAAATTGGGTAACTTGCAACGTGTCTGCCAGGAATCTGAATCCAAATTGAGTCTAACTCTCGATGACAATGTGAAACTTTCAAAGGAAAGG GATTCACTGGCAATGACCGCAAAGAAACTTGGACGTGATTTGGCAAAGTTGGAGACATTTAAGAGGCAACTAATGCAGTCACTAAGTGATGATAGTTCAT CGCAGCAAGCTGAATCCGTGGATATTGGCACCTGTGATCAATCAGTTCCTAGAGTCTATCCCGACAAAGATGAGGGGATGAATGGCTATGTAACCCACCA TTCTTTCAGTGGCTGTACTGATATCAGAAACAACAATAGTATTGATGAGGCTTCTAGGCATGCTGGACAAAGATTTTCTATCACCCCATATATTACACCA CGGCGGACTCCAACTGGAACTCCAAACATTATTTCTACAAGTGTATCTCCTAAAGGTTATTCTGCTGCTGGATCTCCTCAGAGAACCTCAGGGGCAACTT CTCCTACAAAGCCTCAATATGATAAACAAGCTTCCCTTTCTTCATGGTACCCGTCAAGCCAGCAATCATCAGCGGCAAACTCTCCTCCCCGTGGTCGTGC AATTCCAGGTCGCCCTCCACGCATGGATGGAAAGGAGTTCTTTCGTCAGGCCAGGAGTCGCCTATCATATGAACAGTTCAGTGCATTTCTGGCTAACATC AAGAAACTAAATGGTCAAGAACAAACTCGAGAGGAAACTTTAAGGAAAGCAGGAGAGATATTTGGGACAGAAAACAAAGATCTTTATCTTTCTTTCCAAG GATTGCTTAATCGCAACATACACTAG
AA sequence Show only first row Show all	>Potri.005G097600.4 pacid=42802366 polypeptide=Potri.005G097600.4.p locus=Potri.005G097600 ID=Potri.005G097600.4.v4.1 annot-version=v4.1 MSQHTTGGTDFSLPDEILAVIPLDPYEQLDLARKITSMAIASRVSNLESEMGRMKQKMLEKDHIIFELQEKLGNLQRVCQESESKLSLTLDDNVKLSKER DSLAMTAKKLGRDLAKLETFKRQLMQSLSDDSSSQQAESVDIGTCDQSVPRVYPDKDEGMNGYVTHHSFSGCTDIRNNNSIDEASRHAGQRFSITPYITP RRTPTGTPNIISTSVSPKGYSAAGSPQRTSGATSPTKPQYDKQASLSSWYPSSQQSSAANSPPRGRAIPGRPPRMDGKEFFRQARSRLSYEQFSAFLANI KKLNGQEQTREETLRKAGEIFGTENKDLYLSFQGLLNRNIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16520			unknown protein		Potri.005G097600 [exp]	0	1
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.002G181300 [exp]	1.73	0.9423
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.011G091100 [exp]	3.16	0.9246
AT1G29630			5'-3' exonuclease family prote...		Potri.011G077001 [exp]	7.21	0.9151
AT1G14020			O-fucosyltransferase family pr...		Potri.010G164700 [exp]	9.00	0.9246
AT1G23170			Protein of unknown function DU...		Potri.008G131800 [exp]	11.83	0.8954
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	16.73	0.9149	Pt-RGP3.4
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	17.14	0.8688
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	22.27	0.9086
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	22.31	0.9142
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.002G135300 [exp]	22.36	0.8965

Compare expression of checked genes

Potri.005G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.