Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12890 156 / 2e-46 ASML2 activator of spomin::LUC2 (.1) AT2G33350 96 / 2e-22 CCT motif family protein (.1.2) AT1G63820 93 / 6e-22 CCT motif family protein (.1) AT5G41380 93 / 1e-21 CCT motif family protein (.1) AT1G04500 93 / 2e-21 CCT motif family protein (.1) AT5G59990 68 / 3e-13 CCT motif family protein (.1.2) AT4G27900 65 / 5e-12 CCT motif family protein (.1.2) AT5G53420 64 / 5e-12 CCT motif family protein (.1.2.3) AT5G15850 58 / 1e-09 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 57 / 2e-09 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066800 [exp] 477 / 4e-172 AT3G12890 120 / 2e-32 activator of spomin::LUC2 (.1) Potri.001G136700 [exp] 291 / 5e-99 AT3G12890 85 / 3e-19 activator of spomin::LUC2 (.1) Potri.010G066100 [exp] 93 / 3e-21 AT1G04500 263 / 3e-84 CCT motif family protein (.1) Potri.001G101200 [exp] 92 / 3e-21 AT5G41380 187 / 4e-57 CCT motif family protein (.1) Potri.008G171500 [exp] 90 / 2e-20 AT1G04500 305 / 8e-101 CCT motif family protein (.1) Potri.003G130500 [exp] 89 / 2e-20 AT5G41380 210 / 8e-66 CCT motif family protein (.1) Potri.001G233600 [exp] 82 / 2e-18 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2) Potri.012G014000 [exp] 66 / 3e-12 AT5G53420 257 / 1e-85 CCT motif family protein (.1.2.3) Potri.015G014000 [exp] 62 / 5e-11 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031770 [exp] 127 / 2e-34 AT3G12890 104 / 2e-26 activator of spomin::LUC2 (.1) Lus10031192 [exp] 123 / 4e-33 AT3G12890 107 / 2e-27 activator of spomin::LUC2 (.1) Lus10032288 [exp] 96 / 1e-22 AT1G63820 160 / 5e-47 CCT motif family protein (.1) Lus10024655 [exp] 96 / 2e-22 AT1G63820 180 / 2e-54 CCT motif family protein (.1) Lus10014478 [exp] 88 / 1e-20 AT1G04500 219 / 4e-70 CCT motif family protein (.1) Lus10023727 [exp] 91 / 4e-20 AT1G04500 315 / 3e-100 CCT motif family protein (.1) Lus10028137 [exp] 68 / 4e-13 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2) Lus10027344 [exp] 63 / 2e-11 AT5G53420 209 / 3e-67 CCT motif family protein (.1.2.3) Lus10014919 [exp] 63 / 2e-11 AT5G53420 205 / 3e-65 CCT motif family protein (.1.2.3) Lus10019027 [exp] 63 / 4e-11 AT5G53420 250 / 8e-83 CCT motif family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.005G097700.1 pacid=42804080 polypeptide=Potri.005G097700.1.p locus=Potri.005G097700 ID=Potri.005G097700.1.v4.1 annot-version=v4.1 ATGGCTTCCATTCCTCATTTCTATTCTGATTATCAATTTTCTCCAGATAAGTTTTCAGAGATTTCATCTGTAATGGCTCAAGATCATAGATATGCTAGAA CTGGTTCATTTTCTAGCACAAACATGTCAAGTGGTGCAATGTTCGGAGATCACCAAGATTATAGCTTTCCAACATTTTATGATCATGAAAATGGCTGTGC ACTTGATATTTTCCAAGGGGAGTCTGAGATCATGTCGCCGATTCCGGCTACGAAATCATTGCCTGAAAGATTTGGGATTTCGAATATGGTTGTGCCCACA TTGATGGATTATAAAATGGGGTCTAATTGTGGCATCGCCAAAATTCAGAGTTTTGGCGGCGGATTTCAGTTATCGGATGTGTGTGAATATGGGGAGGATT GTTGTGGTATTTTGCCAAAATTTACGCCTGCGACGTGTCCTGCTGCTGAAGAAAATTGGAGGCTTGAATACAATCGAATAACAGCAAAAGAAAACACCAA CATGGTCAAGGTTGGTCGTTACACGGTAGAAGAGAGGAAAGATAGAATTCTAAGGTATTTGAAGAAGAGAAACCAAAGGAACTTTAACAAGACCATCAAG TATGCTTGCCGAAAAACCCTAGCTGACCGGAGAGTTCGCGTTCGTGGGAGATTTGCTAAGAACAATGAAATATTTGAAGAGGAAACTGAGGTTAAGAAGA ATGATGATAATATTCCTCATCACCATCATGAAAAAGATACATATTGCACTAGTGATGCAGTTCAGATCAAGAATGACGATGATGATGAAGAACAATGGCT GCAAGAGGCTTTGGCAAGTCTTATGTTTGTACCGTATATTGCTGCTGGATAA
AA sequence Show only first row Show all	>Potri.005G097700.1 pacid=42804080 polypeptide=Potri.005G097700.1.p locus=Potri.005G097700 ID=Potri.005G097700.1.v4.1 annot-version=v4.1 MASIPHFYSDYQFSPDKFSEISSVMAQDHRYARTGSFSSTNMSSGAMFGDHQDYSFPTFYDHENGCALDIFQGESEIMSPIPATKSLPERFGISNMVVPT LMDYKMGSNCGIAKIQSFGGGFQLSDVCEYGEDCCGILPKFTPATCPAAEENWRLEYNRITAKENTNMVKVGRYTVEERKDRILRYLKKRNQRNFNKTIK YACRKTLADRRVRVRGRFAKNNEIFEEETEVKKNDDNIPHHHHEKDTYCTSDAVQIKNDDDDEEQWLQEALASLMFVPYIAAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.005G097700 [exp]	0	1
					Potri.002G006501 [exp]	2.82	0.7528
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G243400 [exp]	3.74	0.7608
AT3G09510			Ribonuclease H-like superfamil...		Potri.004G015067 [exp]	4.89	0.8020
AT1G06750			P-loop containing nucleoside t...		Potri.005G220000 [exp]	8.71	0.7258
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	8.83	0.7657
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	8.94	0.8008
AT3G11760			unknown protein		Potri.010G244100 [exp]	9.16	0.7767
AT5G11630			unknown protein		Potri.002G045600 [exp]	10.39	0.7422
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.003G057400 [exp]	13.22	0.6914	Pt-LE.2
					Potri.001G282604 [exp]	15.81	0.7692

Compare expression of checked genes

Potri.005G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.