Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31320 193 / 6e-64 AS2 LBD4 LOB domain-containing protein 4 (.1) AT1G16530 170 / 6e-55 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT2G30130 162 / 1e-51 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G07900 145 / 9e-45 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 142 / 2e-43 AS2 LBD11 LOB domain-containing protein 11 (.1) AT2G40470 142 / 3e-43 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT5G63090 138 / 3e-42 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 136 / 1e-41 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G66870 139 / 6e-41 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G30340 136 / 2e-40 AS2 LBD13 LOB domain-containing protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066700 [exp] 253 / 3e-88 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 210 / 1e-70 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 207 / 2e-69 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.008G072800 [exp] 166 / 1e-53 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.010G184400 [exp] 166 / 2e-53 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 164 / 7e-53 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.009G076900 [exp] 161 / 2e-51 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G043900 [exp] 146 / 8e-45 AT1G07900 218 / 2e-72 LOB domain-containing protein 1 (.1) Potri.013G081200 [exp] 145 / 1e-44 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031191 [exp] 198 / 3e-66 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 194 / 2e-64 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 194 / 3e-64 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 190 / 4e-63 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10031285 [exp] 164 / 1e-52 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031855 [exp] 163 / 2e-52 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10007525 [exp] 155 / 5e-49 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10017431 [exp] 152 / 1e-47 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10040373 [exp] 144 / 5e-44 AT2G28500 211 / 7e-69 LOB domain-containing protein 11 (.1) Lus10009930 [exp] 143 / 1e-43 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.005G097800.1 pacid=42803536 polypeptide=Potri.005G097800.1.p locus=Potri.005G097800 ID=Potri.005G097800.1.v4.1 annot-version=v4.1 ATGAAGGAGAGCGGTCGAAAACATGGTGCACTTTCGCCATGCGCAGCATGCAAGCTTCTAAGAAGAAGATGTGCTCAAGACTGTGTGTTTGCTCCTTATT TTCCAGCTGATGAGCCTCAGAAGTTTGCCAGTGTGCACAAGGTCTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAATTACCTGAGCACCAACGAAG AGATGCAGTAAGTTCCATGGTTTATGAAGCAAATGCAAGGGTTCGTGACCCAGTTTATGGTTGTGTTGGAGCCATATCATCTTTGCAGCAACAAATTAAT TCTTTACAAACCCAATTAGCAGTTGCACAAGCTGAGGTAGTGCACATGAGAATGCGGGAGTTCACTTCTTCCTCTAATACAGGAGCCATGGACATGGCGG TTAATCAGGACAATATGGGGGAGTCTTTGTGGTCATGCTAG
AA sequence Show only first row Show all	>Potri.005G097800.1 pacid=42803536 polypeptide=Potri.005G097800.1.p locus=Potri.005G097800 ID=Potri.005G097800.1.v4.1 annot-version=v4.1 MKESGRKHGALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQIN SLQTQLAVAQAEVVHMRMREFTSSSNTGAMDMAVNQDNMGESLWSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.005G097800 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Potri.001G463100 [exp]	8.71	0.8232
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	11.74	0.8235
					Potri.014G057850 [exp]	19.07	0.8140
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	28.58	0.7819
AT1G14900		HMGA	high mobility group A (.1)		Potri.008G132400 [exp]	30.33	0.7824	HMGA903
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.009G007100 [exp]	30.72	0.8186
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.003G002800 [exp]	31.30	0.7689	PME2.15
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	32.32	0.8176
AT5G05365			Heavy metal transport/detoxifi...		Potri.010G182700 [exp]	36.85	0.7335
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114375 [exp]	37.78	0.8163

Compare expression of checked genes

Potri.005G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.