Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LOS1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 1648 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 1549 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 598 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 592 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 439 / 1e-139 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G13650 108 / 3e-24 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G39900 108 / 4e-24 Small GTP-binding protein (.1) AT1G62750 101 / 7e-22 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT2G31060 98 / 6e-21 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 97 / 1e-20 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065600 [exp] 1696 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 1695 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 605 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 603 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.009G152500 [exp] 448 / 7e-143 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.002G177032 [exp] 109 / 1e-28 AT1G56070 106 / 1e-28 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.017G079800 [exp] 107 / 1e-23 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 100 / 3e-21 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.003G113500 [exp] 99 / 4e-21 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031763 [exp] 1428 / 0 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 1424 / 0 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 919 / 0 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 776 / 0 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 600 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 597 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 494 / 2e-170 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 434 / 4e-138 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043478 [exp] 304 / 1e-95 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 225 / 9e-65 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.005G098100.1 pacid=42802994 polypeptide=Potri.005G098100.1.p locus=Potri.005G098100 ID=Potri.005G098100.1.v4.1 annot-version=v4.1 ATGGTGAAGTTTACAGCAGAGGAGCTTCGGCGTATTATGGACTACAAGCATAACATCCGTAATATGTCCGTTATTGCTCATGTTGATCATGGAAAATCAA CACTTACAGATTCTCTTGTTGCCGCTGCTGGTATCATTGCCCAAGAGGTTGCTGGTGATGTCCGAATGACAGATACCCGTGCTGATGAGGCAGAGCGCGG TATCACTATAAAATCTACTGGTATCTCTCTATATTATGAGATGGCTGATGAAGCCCTCAAGAACTTCAAGGGAGAGAGACAAGGGAACGAGTATCTCATC AATCTTATTGACTCCCCTGGACACGTCGACTTTTCATCTGAGGTCACAGCTGCTCTTCGAATTACTGATGGTGCCCTCGTGGTGGTGGACTGTATCGAGG GTGTGTGTGTTCAAACTGAAACCGTGCTTCGACAGGCTTTGGGTGAGAGGATCAGGCCTGTCTTGACTGTCAACAAGATGGACAGGTGTTTCCTGGAGCT CCAGGTTGATGGGGAGGAGGCTTATCAGACATTCTCTAGGGTTATTGAGAATGCCAATGTCATCATGGCAACATATGAAGATCCCCTCCTTGGTGACTGC CAGGTCTACCCTGAAAAGGGTACTGTTGCTTTCTCTGCTGGTTTGCATGGTTGGGCTTTCACTTTGACCAACTTTGCCAACATGTACGCCTCAAAGTTTA AAGTGGATGAGGGAAAGATGATGGAGAGGCTGTGGGGTGAGAACTTCTTCGATCCTGCTACCAAGAAGTGGAGCAGCAAGAACACCGGTTCTCCCACATG CAAGCGTGGTTTTGTGCAATTTTGTTATGAGCCAATCAAGCAGATTATTAACACTTGCATGAATGACCAAAAGGATAAATTGTGGCCCATGCTCCAAAAG CTTGGTGTTGTCATGAAGTCTGAGGAGAAGGACTTGATGGGAAAGGCTTTGATGAAGCGTGTGATGCAGACATGGCTGCCAGCAAGTACTGCTCTGCTTG AAATGATGATCTTTCACCTCCCCTCTCCTGCCAAGGCTCAAAAATACCGTGTGGAGAACTTGTACGAGGGTCCACTTGATGATGTTTATGCCAATGCTAT CAGGAATTGCGACCCTGAAGGCCCCCTCATGCTTTATGTATCTAAGATGATTCCTGCATCTGACAAGGGTAGGTTCTTTGCCTTCGGGCGTGTTTTTTCT GGAAAGGTATCCACTGGTCTGAAGGTTAGGATCATGGGACCAAACTTTGTCCCTGGTGAGAAGAAGGACCTGTATGTGAAGAGTGTGCAGAGAACCGTCA TTTGGATGGGAAAGAGGCAAGAAACAGTTGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGTTTGGATCAGTTCATCACCAAGAATGCCACTTT AACAAACGAGAAGGAAGTTGATGCCCACCCTATTCGTGCTATGAAGTTCTCCGTGTCTCCAGTTGTGCGTGTTGCTGTTCAATGTAAGGTGGCATCTGAC CTCCCAAAGCTCGTTGAAGGTCTGAAGCGGTTGGCCAAGTCTGATCCCATGGTTGTCTGTTCCATCGAGGAATCTGGAGAGCATATCATTGCTGGTGCAG GAGAACTCCACCTTGAGATCTGTTTGAAGGATTTGCAGGAAGACTTTATGGGTGGGGCTGAGATCATCAAGTCTGATCCTGTTGTCTCTTTCCGTGAGAC TGTCCTGGAGAAGTCCTGCCGTGTGGTGATGAGCAAATCTCCTAACAAGCACAACCGTCTCTACATGGAGGCACGACCCATGGAAGAAGGGCTTGCTGAG GCTATTGATGACGGCCGTATTGGTCCAAGAGACGATCCTAAGAATCGTGCCAAGATCTTGTCGGAGGAGTTTGGTTGGGACAAGGATCTTGCTAAGAAAA TCTGGTGTTTTGGTCCTGAGACTACGGGACCCAACATGGTTGTGGATATGTGTAAGGGAGTTCAGTACCTTAATGAAATCAAGGATTCTGTTGTTGCTGG GTTCCAATGGGCTTCAAAGGAAGGTGCTTTGGCTGAAGAAAACATGAGAGGTATCTGCTTTGAAGTCTGTGACGTGGTTCTCCATGCTGATGCCATTCAC AGAGGTGGTGGTCAGGTTATTCCAACTGCCAGGAGGGTTATCTATGCTTCCCAGATCACTGCCAAGCCCAGGCTTCTTGAGCCTGTTTACTTGGTGGAGA TCCAAGCTCCAGAGCAGGCTCTTGGTGGTATCTACAGCGTTCTTAACCAGAAACGTGGTCACGTGTTTGAAGAAATGCAGAGGCCTGGGACTCCCCTATA CAACATCAAGGCATACCTTCCTGTCATAGAGTCTTTTGGATTTTCAGGGACTTTGAGGGCTGCAACATCAGGACAGGCTTTCCCACAATGTGTTTTCGAT CACTGGGACATGATGTCTTCTGATCCTTTGGAGGCTGGCACACAGGCAGCTCAGCTTGTTACTGATATCAGGAAGCGGAAGGGTTTGAAGGAGCAGATGA CACCTCTATCTGACTTTGAGGACAAGCTATAA
AA sequence Show only first row Show all	>Potri.005G098100.1 pacid=42802994 polypeptide=Potri.005G098100.1.p locus=Potri.005G098100 ID=Potri.005G098100.1.v4.1 annot-version=v4.1 MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMADEALKNFKGERQGNEYLI NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDC QVYPEKGTVAFSAGLHGWAFTLTNFANMYASKFKVDEGKMMERLWGENFFDPATKKWSSKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQK LGVVMKSEEKDLMGKALMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPLDDVYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS GKVSTGLKVRIMGPNFVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASD LPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLEKSCRVVMSKSPNKHNRLYMEARPMEEGLAE AIDDGRIGPRDDPKNRAKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIH RGGGQVIPTARRVIYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD HWDMMSSDPLEAGTQAAQLVTDIRKRKGLKEQMTPLSDFEDKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.005G098100 [exp]	0	1	LOS1.3
AT4G39200			Ribosomal protein S25 family p...		Potri.010G239300 [exp]	3.60	0.9034
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	4.58	0.8836	Pt-RPL15.4
AT3G56210			ARM repeat superfamily protein...		Potri.008G075600 [exp]	6.00	0.8666
AT1G10840		TIF3H1	translation initiation factor ...		Potri.014G147100 [exp]	10.48	0.8562	TIF3.5
AT1G18850			unknown protein		Potri.015G064300 [exp]	11.48	0.8840
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	14.42	0.8286
AT5G48760			Ribosomal protein L13 family p...		Potri.001G314500 [exp]	15.55	0.9001	RPL13.1
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.013G106800 [exp]	16.43	0.8915	Pt-RPL15.2
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Potri.019G014396 [exp]	16.52	0.8564
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Potri.009G158700 [exp]	24.67	0.8497	Pt-RPL30.2

Compare expression of checked genes

Potri.005G098100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.