Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56010 332 / 6e-114 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT3G12977 281 / 8e-95 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 216 / 2e-68 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G07680 215 / 3e-68 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G61430 215 / 8e-68 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G18270 213 / 3e-67 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G53950 205 / 1e-63 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G28530 204 / 1e-63 NAC ANAC074 NAC domain containing protein 74 (.1.2) AT3G29035 198 / 1e-61 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT2G24430 197 / 2e-61 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065400 [exp] 520 / 0 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.017G086200 [exp] 216 / 3e-68 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.015G046800 [exp] 213 / 3e-67 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.012G001400 [exp] 213 / 5e-67 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.002G037100 [exp] 210 / 8e-67 AT4G28530 276 / 6e-92 NAC domain containing protein 74 (.1.2) Potri.013G054200 [exp] 213 / 1e-66 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.012G056300 [exp] 211 / 1e-66 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G020000 [exp] 209 / 1e-65 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 209 / 5e-65 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042466 [exp] 308 / 8e-104 AT1G56010 273 / 9e-90 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10026200 [exp] 283 / 1e-93 AT1G56010 254 / 3e-82 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10022915 [exp] 204 / 4e-64 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10026879 [exp] 206 / 5e-64 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10003435 [exp] 206 / 6e-64 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10033905 [exp] 203 / 2e-63 AT4G28530 271 / 2e-89 NAC domain containing protein 74 (.1.2) Lus10005537 [exp] 201 / 1e-62 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10038937 [exp] 200 / 2e-62 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10009029 [exp] 200 / 8e-62 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10027227 [exp] 198 / 1e-61 AT3G18400 275 / 1e-91 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G098200.1 pacid=42804909 polypeptide=Potri.005G098200.1.p locus=Potri.005G098200 ID=Potri.005G098200.1.v4.1 annot-version=v4.1 ATGAGCAACATAAGCTTTGTGGAGGCAAAGTTGCCACCAGGGTTCAGGTTTCATCCAAGAGATGAAGAACTTGTATGCGATTACTTGATGAACAAGGCTT CTCAGTGCTGTGATTCCCTTCTTATGATAGAAGTTGACCTCAACAAGTGTGAGCCGTGGGATATCCCTGAAGCGGCACGCGTAGGTGGCAAGGAATGGTA TTTTTATAGCCAAAGAGATCGCAAGTATGCAACTGGATTGAGAACTAATCGTGCAACAGCTTCTGGATATTGGAAAGCCACAGGGAAGGACAGGCACGTC CTTCGCAAGGGCACTCTTGTTGGCATGAGAAAGACCTTGGTGTTCTACCAAGGTAGGGCACCCAAAGGGAAAAGAACTGACTGGGTCATGCATGAGTTTC GCCTTGAAGGACCTCTTGGTCCCCCAAAAATTTCTTCAGATAAGGAAGACTGGGTTTTATGCCGAGTGTTCTATAAAAGTAACAGAGAAGTTGTGGCCAA ACCTAGCATGAGAAGCTGCAATGATGACACAGGTTCTTCATCTTTGCCCGCATTATTGGATTCATACATCACTTATGAGCAAACTCAACCCAATTTAGAT GAGCACGAGCAAGTGCCCTGCTTCTCCATTTTCTCACAAAACCAAACCAGCCAAAATCTCCTGGCTCCGTACACCACCCAGATGGAAGCCCCGAACGCAC CGGCTAAGTGTACGAGCCCATTTGGAAAAGTACCTATGGATATTACCACTCCCTTGGACTCTTTTTCTTGTGACACAAAGGTACTAAAAGCTGTTTTGAA TAACCTTACCAAGATGGAAAGCTATGGCAACCTTAAAGGGTCACCAAGCTTAGGAGAAGGTAGTTCAGAGAGCTACATATCTGAAGTGGGCATGTCCAGC TTATGGAATCATTATTGA
AA sequence Show only first row Show all	>Potri.005G098200.1 pacid=42804909 polypeptide=Potri.005G098200.1.p locus=Potri.005G098200 ID=Potri.005G098200.1.v4.1 annot-version=v4.1 MSNISFVEAKLPPGFRFHPRDEELVCDYLMNKASQCCDSLLMIEVDLNKCEPWDIPEAARVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHV LRKGTLVGMRKTLVFYQGRAPKGKRTDWVMHEFRLEGPLGPPKISSDKEDWVLCRVFYKSNREVVAKPSMRSCNDDTGSSSLPALLDSYITYEQTQPNLD EHEQVPCFSIFSQNQTSQNLLAPYTTQMEAPNAPAKCTSPFGKVPMDITTPLDSFSCDTKVLKAVLNNLTKMESYGNLKGSPSLGEGSSESYISEVGMSS LWNHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	0	1
AT1G29640			Protein of unknown function, D...		Potri.011G076900 [exp]	3.60	0.9809
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	3.74	0.9808	Pt-GAS1.1
					Potri.001G248708 [exp]	4.58	0.9785
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.009G102500 [exp]	5.00	0.9755
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.011G123300 [exp]	5.47	0.9746	Pt-ATNAC3.2,NAC036
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	6.32	0.9767
AT4G02830			unknown protein		Potri.002G053700 [exp]	6.70	0.9690
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	7.74	0.9667	Pt-ATNAC3.1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	8.94	0.9709
AT1G02070			unknown protein		Potri.005G158400 [exp]	11.35	0.9450

Compare expression of checked genes

Potri.005G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.