Plant FIBer expression Database

Potri.005G098300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12970 162 / 2e-45 unknown protein
AT1G56020 127 / 2e-32 unknown protein
AT1G79060 113 / 3e-27 unknown protein
AT5G66800 42 / 0.0002 unknown protein
AT3G50640 41 / 0.0007 unknown protein
AT3G05980 41 / 0.001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G065200
[exp]
400 / 2e-136 AT1G79060 119 / 1e-29 unknown protein
Potri.007G042600
[exp]
53 / 6e-08 AT5G66800 121 / 4e-35 unknown protein
Potri.009G102800
[exp]
49 / 2e-06 AT4G34419 95 / 2e-25 unknown protein
Potri.004G141600
[exp]
41 / 0.0004 AT4G34419 95 / 2e-25 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031218
[exp]
236 / 1e-72 AT1G79060 253 / 7e-80 unknown protein
Lus10031795
[exp]
236 / 1e-72 AT1G79060 253 / 3e-80 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G098300.1 pacid=42803630 polypeptide=Potri.005G098300.1.p locus=Potri.005G098300 ID=Potri.005G098300.1.v4.1 annot-version=v4.1
ATGGCCTCAGCTTGTGTTAACAACATGGGCATGTCCCCTGAAAATTTCCCACCCAAAACTTACCAATCTTATGGCTGGTTGAGCCCGAGAATCTCTTTTA
GCCGTGAAGAGGATAGTAATAACACAACCACCTCTAAAACCACCTCCGCCAAATCATCATCAGCAGCAGCCTCCTCAGCTCCTCTACCCCCACCTCATCC
ACAGCAACTAGATCCACCGGAGACCAAGGATTCTGTCGACTTTGAGTTCCGATTAGACAACTCCTTCACCATGCTCCCTGCAGATGAGCTGTTTTCTGAT
GGGAAATTAATGCCATTACAAATCAATACTGGTAACGCCAAACCATCTTTGCCACCATCTACTTCTACCTCGGTCAACGAGTTGACCGAGGCGGTAAGGC
TGCCGGAGCCCGGGAGGGAGCCGGTGAAGTCTTGCCGGAGATTGGAGATGGAGATTTCTGGGACCGATCCATACTTGTTTTCCCCCAAAGCTCCCAGATG
TTCGAGCCGGTGGAAGGAGCTTCTGGGGTTAAAGAAATTACACCAAAACCCTAAGCCTGAAACTCAAAAACCATCAACCAGGACGGCATTGTTTTCTTCG
TCCTCGTCGAATCCCAAGTCCCTTAAACATATCTTGCACAGGAACTCAAAAACCTGCAATTGCAACACATCGTCCTCAAGCTCCTCCTTCTCCTACACCT
TATTAGATAATTCATTGAGCCTCCCACTGCTAAGAGATTTGGATTGCGAATCGCTCTCCATATCTTCTTCTCGCTTATCGCTGTCATCTTCATCTTCATC
CCACGAGCACGAAGATCTCCCAAGATTATCCCTCGACTCTGATAAACCAAGCACCAACCTCAACTTAATGCAAAACCCAGTTCCGAATCCATTCATTCTC
AACCGAAATCAAAACCAAAACCCACCAAGAATGAGAATGGTGAAGCCATTATCAGAGAATGGAAACAACAATAGCGGCACCTCTTCAACTACAAGGGTAG
GGAGGAGCCCAATGCGGAGGGCAGCAGGGGAGTCGAGTGAGGTTTCAATAAGTAGTGGGGTTTCAGTGGATAGCCCAAGAATGAATTCATCAGGGAAAAT
AGTATTTCAAAGCTTGGAAAGAAGTTCAAGTAGTCCAAGTAGTTTTAATGGAGGGCCAAGATTTAAACATAGAGGAATGGAGAGATCTTATTCGGCTAAT
GTTAGAGTGACTCCAGTTCTTAACGTTCCTGTTTGTTCTCTTAGAGGGAGTTCAAGGTCAGGTTTTGGGTTCGGTCAGTTGTTTTCTTCTTCACCGCAAA
AAAGAGATGGCTTTAGCAAAGGGTATCAGCAGCAGCAGCAGCAGAATATTACTAGCAGCAGCAACAAGTACAGGTCTGAGAGAGGTTAA
AA sequence
>Potri.005G098300.1 pacid=42803630 polypeptide=Potri.005G098300.1.p locus=Potri.005G098300 ID=Potri.005G098300.1.v4.1 annot-version=v4.1
MASACVNNMGMSPENFPPKTYQSYGWLSPRISFSREEDSNNTTTSKTTSAKSSSAAASSAPLPPPHPQQLDPPETKDSVDFEFRLDNSFTMLPADELFSD
GKLMPLQINTGNAKPSLPPSTSTSVNELTEAVRLPEPGREPVKSCRRLEMEISGTDPYLFSPKAPRCSSRWKELLGLKKLHQNPKPETQKPSTRTALFSS
SSSNPKSLKHILHRNSKTCNCNTSSSSSSFSYTLLDNSLSLPLLRDLDCESLSISSSRLSLSSSSSSHEHEDLPRLSLDSDKPSTNLNLMQNPVPNPFIL
NRNQNQNPPRMRMVKPLSENGNNNSGTSSTTRVGRSPMRRAAGESSEVSISSGVSVDSPRMNSSGKIVFQSLERSSSSPSSFNGGPRFKHRGMERSYSAN
VRVTPVLNVPVCSLRGSSRSGFGFGQLFSSSPQKRDGFSKGYQQQQQQNITSSSNKYRSERG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12970 unknown protein Potri.005G098300
[exp]
0 1
AT1G53440 Leucine-rich repeat transmembr... Potri.006G014232
[exp]
2.00 0.8759
AT4G31980 unknown protein Potri.003G209000
[exp]
2.82 0.8726
AT2G39490 F-box family protein (.1) Potri.008G050800
[exp]
4.58 0.8470
AT5G49560 Putative methyltransferase fam... Potri.007G025600
[exp]
4.89 0.8366
AT5G27550 P-loop containing nucleoside t... Potri.005G031500
[exp]
6.70 0.8574
AT3G14470 NB-ARC domain-containing disea... Potri.006G271800
[exp]
7.74 0.8669
AT1G13920 Remorin family protein (.1) Potri.010G160900
[exp]
9.79 0.8585
AT5G57685 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, A... Potri.006G267900
[exp]
11.74 0.8015
AT1G69550 disease resistance protein (TI... Potri.005G031899
[exp]
13.00 0.8359
AT5G18960 FAR1_related FRS12 FAR1-related sequence 12 (.1) Potri.016G059150
[exp]
14.07 0.8264

Potri.005G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.