Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34750 524 / 4e-180 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT1G30590 494 / 2e-168 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) AT2G39240 404 / 7e-134 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065101 [exp] 218 / 2e-67 AT2G34750 59 / 4e-10 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026162 [exp] 637 / 0 AT2G34750 540 / 0.0 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10005701 [exp] 440 / 5e-147 AT2G34750 360 / 1e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10005693 [exp] 423 / 2e-141 AT2G34750 358 / 2e-116 RNA polymerase I specific transcription initiation factor RRN3 protein (.1) Lus10018154 [exp] 100 / 2e-23 AT1G30590 98 / 1e-22 RNA polymerase I specific transcription initiation factor RRN3 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05327 [poplar] [flax] RRN3 RNA polymerase I specific transcription initiation factor RRN3
Representative CDS sequence Show only first row Show all	>Potri.005G098500.2 pacid=42805432 polypeptide=Potri.005G098500.2.p locus=Potri.005G098500 ID=Potri.005G098500.2.v4.1 annot-version=v4.1 ATGGGTGTTGAGTTAACCCATCAATATACAGAATATAGAGCAATGGAGGATCAAGAGGAGGTGGAGGAAGGTGTTAGTATTACTGATTGGGATTTAGTTT ATCATGTTAGAGATGCCCTTTTATCTGTCAAAACGGGTGACAGGAGCAGTTACCACCAGCTTGTTGGGGTTTTGCATCACAGAGATCGTTCTGCTCCTGA TAAAGTGGCTTTGCTTTTGACGAGTCTAAAGGCACTATCTGGGGCAGTTTCTTACATAAACGACGTTGACCATGTCTCACTTCTTCAATCTATTTTTGGA ATGAGCATGTGGAACTGTGCGCCTGATGTGATGGATGCATTGCTTGAACTTATAATATGCTTGGCTGCTTCAAATGGAAAATATGTTGATTTATGTCTTG ATATGCTTGTAAACAATTTTATGCCACCGATGGAATCAGATATGCTCCGGCATCCACGTGGTCAGGCAAAAAAGGACCAAGTTCTTCCTCGTGTGCATAC TGGTCTAGAAGTTATTGTTGATTTGGTGCCTTTGGCAGCCTTGAAATTGTCTACAAATGTTGTACAAAAGAGGCCTATGTTCTTCAGGAAGGATTTCAAC ATGGATCGTCTAAAATGTCGCATGGAGATATATTTGAAGAATATGCTAATGTTGGAGGGTGGTGCTATTAGAGAATTTGTTGGGCACAGTATGCTCGTGG AAGTGGTGAATATGATGCTAGAATTGGACGTTGCAATTGGTTGGGATGAATTGTTAAGGGATGATCCTAGTAAAGGCATCTTTACAATGGAGTTAGAAGA TGAGGAAGAGGAAGCTGGTGACGATGGTCAGGCAAATGATGGTGAGCTTCCAAGCACGTTAACTCTCAGGAATTTAGGTAAAAATGTCACTGCTGACTTG CTGGATAGCTTGATGATACAATTTCTCGAGCATCTTGAAGCCTGTGCGGACAAGAAGCGTTTGAGTGAGGTATTTGAAACTCTTTTATCTTCATTCATGG CAACTATTTTGAACACGTACAAGTCAAAGTTTTCTCAGTTCACGATTTTCTATGCCTGTGCACTTGATCCTGAAAATTGTGGTGTGAAATTTGCTCAAAC ACTCGTGGATTTGTTCATATCTACTTGCAACCCACCGGTTACGAGGATGAGTGCTGTGGCTTATCTTTCTAGCTATTTGGCTCGTGGGAAGTTTCTATCT GCTGCCTTCGTCATGAACATGTTGAAAAGGCTGGTGGATTGGTGTTTGAGATATTGTGAAGAGCAGGATAGTGACATGAATCCAAAAGCACATCAAGTTT TCTATTCTGCATGCCAGGGAATTATGTATGTGCTCTGCTTTCATATGAAATCAATAATGAATGTTCCTACCCTCAAATCACAGCTCCTCCTCATGCCTAT AGAGCCAATATTGAAGCACAAATTGGGGCCATTGGAGGTCTGCTTGCCATCAATTGTAAATGAGTTTCTCAAACAAGCTAAAGCAGCACATCTGTTCACC ATCTCCAAAGCATTCATCTTCGAAGATTTGCTGGAATCAGATCTTTCTAGGGATTTTGGTGGGCTGGAGAGGCTGGACATGTTCTTCCCATTTGACCCAT GTTTGCTGAAGAAATGTGACAGAGGTTTCATCCGGCCAAACTTTATATACTGGAACCATGTCAAAACTACCTATGATGATGATGAGGAAGACAGCAGTGA TGAAGACATTGCTGATGATTTTGGGGTTCTGAATGAAGAGAATTTCATGGAAGAAGGGATGGCAAGGAGTTTTGATCAAGATATCGATCTTGATGAATTT GACTACGTCATGAACAAGATGTCCATCACACCTAAGAACACGTCAGGTTTCCACTTTGGTGGTGAACGAATGCCTTCAAAGATAAGACCCTCAACAAGTC CAGAGTCCTTGTGA
AA sequence Show only first row Show all	>Potri.005G098500.2 pacid=42805432 polypeptide=Potri.005G098500.2.p locus=Potri.005G098500 ID=Potri.005G098500.2.v4.1 annot-version=v4.1 MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSYHQLVGVLHHRDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFG MSMWNCAPDVMDALLELIICLAASNGKYVDLCLDMLVNNFMPPMESDMLRHPRGQAKKDQVLPRVHTGLEVIVDLVPLAALKLSTNVVQKRPMFFRKDFN MDRLKCRMEIYLKNMLMLEGGAIREFVGHSMLVEVVNMMLELDVAIGWDELLRDDPSKGIFTMELEDEEEEAGDDGQANDGELPSTLTLRNLGKNVTADL LDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFYACALDPENCGVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLS AAFVMNMLKRLVDWCLRYCEEQDSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIEPILKHKLGPLEVCLPSIVNEFLKQAKAAHLFT ISKAFIFEDLLESDLSRDFGGLERLDMFFPFDPCLLKKCDRGFIRPNFIYWNHVKTTYDDDEEDSSDEDIADDFGVLNEENFMEEGMARSFDQDIDLDEF DYVMNKMSITPKNTSGFHFGGERMPSKIRPSTSPESL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34750			RNA polymerase I specific tran...		Potri.005G098500 [exp]	0	1
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.004G143400 [exp]	1.73	0.7891
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	3.16	0.7733	PRL1.1
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Potri.001G391400 [exp]	4.24	0.7970	Pt-IE.1
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Potri.008G114300 [exp]	4.47	0.7847
					Potri.014G005200 [exp]	8.36	0.7583
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.017G090300 [exp]	8.48	0.7183
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057600 [exp]	9.94	0.7500	CCRL2,CCR.9
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074600 [exp]	12.84	0.7368
AT4G39235			unknown protein		Potri.002G057100 [exp]	15.16	0.7192
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	21.21	0.7253

Compare expression of checked genes

Potri.005G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.