Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35470 672 / 0 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 518 / 4e-180 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G11330 189 / 3e-53 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 179 / 1e-49 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G26500 173 / 8e-48 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT1G12970 166 / 3e-45 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G26050 164 / 3e-45 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 147 / 3e-39 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G29880 146 / 7e-39 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT3G15410 106 / 4e-24 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065000 [exp] 927 / 0 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 397 / 1e-132 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 397 / 2e-132 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.010G046500 [exp] 177 / 4e-49 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.015G083800 [exp] 166 / 1e-44 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.012G085600 [exp] 164 / 5e-44 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 152 / 4e-41 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 152 / 6e-41 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.015G043600 [exp] 114 / 4e-26 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035976 [exp] 608 / 0 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 524 / 3e-173 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 392 / 6e-131 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 271 / 1e-87 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10013689 [exp] 172 / 2e-47 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 171 / 2e-46 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 143 / 8e-38 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 108 / 4e-26 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 104 / 7e-25 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10004558 [exp] 96 / 2e-22 AT4G35470 92 / 3e-21 plant intracellular ras group-related LRR 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G098600.5 pacid=42802514 polypeptide=Potri.005G098600.5.p locus=Potri.005G098600 ID=Potri.005G098600.5.v4.1 annot-version=v4.1 ATGGAAATAACGAATGTGAAATCTGTTGATCAAGCGGTGGAGGAAATTATGAGGATTCATAGATCTTTACCGACAAGACCAGGGATCGAGGAAGTAGAAG CAGCAAAGACATTGATTCGGAATGTCGAAAAGGAAGAGCAAGCGAGAATGGAAGCGATTTCGAAGCAGACAAAGACCCCAGATGTTCCTCAAGAGTTGTT CATGATCCTGCAAGAAATGCAAAAACAGTTGAGCTTTTTTCAAACCAAAGAACAAAAATTGGAGGCTGTAAAATTGCTTGATCTTGAAAATGTTCATAAC CTGTTCGATGAATTCATTCAAAGAGCTTCCAAATGCCTCTCTTGGCCTCCTCCTCCTCCTACTTCTTCTTCTCCCACTTCTGTTTCTGGGTTTGGTTCTT CTTCCAATTATGCTAATGGGGGCAGTAGTTCGTTTAAGGGGAGCGCTGCTGCTGCTGCGGCGGGTTCTTCTTCGATTGATAGATCATCTATGGCTACCAC GTCCGGATTGTATTATGCAGAGAAAGAGCCGACGAGGAGTGCTGAATTGTTTACTAGAGATGATAGTTATGTGAAGAAGGCGAAATCTTCGTTATATTCT GATGGGATTGGTGTTTCTTCTACGCCGCAGATTGTGGATTCTACTTTAAAAGCTAGTTCAATCAGTTCAAGTCAAGATGGGGAGAAGTTGAGTCTAATTA AGCTTGCGAGTTTGATTGAAGTGTCTTCGAAAAAAGGAACTCAAGAGCTTAATCTACAAAACAAGTTGATGGATCAAGTTGATTGGCTACCGGATTCGAT AGGCAAGCTATCGAGTTTGGTTACACTGGACTTGTCTGAGAACAGGATTGTGGCGTTGCCAGAAACTATTGGAGGTCTTTCGTCATTGACGAAGTTGGAT TTGCATTCCAATAGAATTGGCGAACTCCCAGGATCTATTGGGGATCTTCTTAGTTTGGTTGCTCTGGATGTGAGGGGTAACCAGTTATCCTTTCTACCTG CCACATTTGGCAGATTGGTACGACTTCAGGATCTTGATCTGAGCTCAAATAGGCTCTCTTCACTCCCTGATACAATAGGATCACTTGTTAGTCTGAAGAA ATTAAATGTGGAGACAAATGATATTGAAGAAATCCCACATACTATCGGAAAGTGTTCCTCACTAAAGGAGCTTCGTGCAGACTATAACAGGCTCAAGGCA CTCCCCGAAGCTGTTGGAAAGATAGAGACTTTGGAGGTTCTATCTGTTCGGTACAATAACATCAAACAGTTGCCTACAACAATGTCATCTCTATTAAGCT TGAAGGAGCTCGATGTAAGTTTCAACGAGCTTGAGTCAGTGCCTGAGAGCTTGTGTTTTGCTACCTCGCTTGTCAAGATGAATATAGGAAATAATTTTGC TGATATGCAATCCTTACCAAGGTCTATTGGGAACCTTGAGAATCTTGAAGAGCTGGATATTAGCAATAACCAGATACACGCCCTTCCAGACTCTTTTAGG ATGCTAACACGACTACGTATCTTACGTGCTGAAGAAAATCCTTTGGAAGTACCACCAAGACATATAGCTGAAAAGGGTGCTCAGGCTGCTGTTCAATACA TGGTTGAACTTGTTGAAAAGAGTGATGTCAAAGTCCAACCTGTAAAGCAGAAAAAGAGTTGGGCTCAAATTTGCTTCTTTTCAAAGTCTAACAAAAGGAA GCGCAATGGCCTAGACTATGTGAAAGCCTGA
AA sequence Show only first row Show all	>Potri.005G098600.5 pacid=42802514 polypeptide=Potri.005G098600.5.p locus=Potri.005G098600 ID=Potri.005G098600.5.v4.1 annot-version=v4.1 MEITNVKSVDQAVEEIMRIHRSLPTRPGIEEVEAAKTLIRNVEKEEQARMEAISKQTKTPDVPQELFMILQEMQKQLSFFQTKEQKLEAVKLLDLENVHN LFDEFIQRASKCLSWPPPPPTSSSPTSVSGFGSSSNYANGGSSSFKGSAAAAAAGSSSIDRSSMATTSGLYYAEKEPTRSAELFTRDDSYVKKAKSSLYS DGIGVSSTPQIVDSTLKASSISSSQDGEKLSLIKLASLIEVSSKKGTQELNLQNKLMDQVDWLPDSIGKLSSLVTLDLSENRIVALPETIGGLSSLTKLD LHSNRIGELPGSIGDLLSLVALDVRGNQLSFLPATFGRLVRLQDLDLSSNRLSSLPDTIGSLVSLKKLNVETNDIEEIPHTIGKCSSLKELRADYNRLKA LPEAVGKIETLEVLSVRYNNIKQLPTTMSSLLSLKELDVSFNELESVPESLCFATSLVKMNIGNNFADMQSLPRSIGNLENLEELDISNNQIHALPDSFR MLTRLRILRAEENPLEVPPRHIAEKGAQAAVQYMVELVEKSDVKVQPVKQKKSWAQICFFSKSNKRKRNGLDYVKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	1.00	0.8081	GAL1.7
					Potri.014G094600 [exp]	2.64	0.7189
AT5G01090			Concanavalin A-like lectin fam...		Potri.016G107200 [exp]	3.74	0.7531
AT3G05270			Plant protein of unknown funct...		Potri.002G083400 [exp]	8.00	0.7133
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	8.48	0.7305
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.004G206600 [exp]	14.07	0.7222
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	14.69	0.7491
					Potri.006G138400 [exp]	16.97	0.6876
AT1G10180			unknown protein		Potri.015G118500 [exp]	20.39	0.6763
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.014G146100 [exp]	21.93	0.6858	Pt-XTR7.1

Compare expression of checked genes

Potri.005G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.