Plant FIBer expression Database

Potri.005G098650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G098650.1 pacid=42804979 polypeptide=Potri.005G098650.1.p locus=Potri.005G098650 ID=Potri.005G098650.1.v4.1 annot-version=v4.1
ATGGTAATAACAGACTCTCCTTGCAGCAGGTTGTTGTCTTCCAGTGATGTAGATCATTACAGGGAAGAGAGGAATATGGAACATGCCGACGTGACAATGA
GAGCATGGGAATCCATTGAAAGGGTGGCTGGAAGATTTACGAGAAGAAAGATAAAGTTAGTGGTGGGAATGGGGAGGAGGGCGGTCTTGGCTTGTGTTGT
GAAGCTAAAGAGGAAGGTTTGCAGGATCTTGAATGCAAAAAACAGAAGCAGCAACGAAAGGCATGTGTTTTTGAACTATGATATGTGTAGTTATACAAAG
AACTTCGATGATGGAAAGTGGCAGCAGGAGGAGGTTGAGTATTATAGGACTCGATCTTTTGCTTTTAGGTATGGACAAGCTAACAGCTTGGCTTTGTAA
AA sequence
>Potri.005G098650.1 pacid=42804979 polypeptide=Potri.005G098650.1.p locus=Potri.005G098650 ID=Potri.005G098650.1.v4.1 annot-version=v4.1
MVITDSPCSRLLSSSDVDHYREERNMEHADVTMRAWESIERVAGRFTRRKIKLVVGMGRRAVLACVVKLKRKVCRILNAKNRSSNERHVFLNYDMCSYTK
NFDDGKWQQEEVEYYRTRSFAFRYGQANSLAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G098650
[exp]
0 1
AT3G46540 ENTH/VHS family protein (.1) Potri.009G030500
[exp]
1.73 0.8079
Potri.016G114100
[exp]
4.89 0.7683
AT5G61980 AGD1 ARF-GAP domain 1 (.1) Potri.015G105500
[exp]
10.09 0.6886
AT2G20390 unknown protein Potri.014G193150
[exp]
12.00 0.7511
AT3G21510 ATHP3, AHP1 histidine-containing phosphotr... Potri.005G040400
[exp]
13.22 0.7465 Pt-HPT2.3
Potri.016G067501
[exp]
15.49 0.6737
AT2G28085 SAUR-like auxin-responsive pro... Potri.010G226400
[exp]
15.68 0.6505 SAUR65
AT4G39900 unknown protein Potri.007G093200
[exp]
16.24 0.7401
AT3G24570 Peroxisomal membrane 22 kDa (M... Potri.006G242700
[exp]
19.79 0.6389
AT2G42490 Copper amine oxidase family pr... Potri.012G084400
[exp]
20.37 0.6088

Potri.005G098650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.