Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 759 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT3G51490 719 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G20840 616 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT1G30220 114 / 3e-26 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 110 / 2e-25 ATINT1 inositol transporter 1 (.1) AT2G35740 110 / 6e-25 ATINT3 nositol transporter 3 (.1) AT4G16480 109 / 1e-24 ATINT4 inositol transporter 4 (.1) AT1G54730 102 / 1e-22 Major facilitator superfamily protein (.1.2.3) AT3G05165 101 / 2e-22 Major facilitator superfamily protein (.1.2.3.4.5) AT5G16150 100 / 6e-22 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006200 [exp] 797 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 797 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G255400 [exp] 788 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 783 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.017G032200 [exp] 111 / 1e-25 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 108 / 9e-25 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.004G097800 [exp] 106 / 9e-24 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.016G010600 [exp] 105 / 1e-23 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 103 / 6e-23 AT4G16480 788 / 0.0 inositol transporter 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022988 [exp] 813 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 795 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 792 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10030726 [exp] 729 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 727 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 712 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10013208 [exp] 703 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10010886 [exp] 696 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10042820 [exp] 115 / 2e-26 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10028118 [exp] 115 / 2e-26 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G098900.1 pacid=42804372 polypeptide=Potri.005G098900.1.p locus=Potri.005G098900 ID=Potri.005G098900.1.v4.1 annot-version=v4.1 ATGAGGGGAGCTGTTCTTGTAGCACTTGCTGCTACGGTGGGGAATCTGTTACAAGGATGGGATAATTCAACCATTGCAGGATCCATTCCTTACATCAAGG AGGAGTTAAATTTGCAGTCTCAACCAGCAGTAGAAGGGCTGATTGTAGCCATGTCAATTATCGGTGGCACTACTATCACAACATTTTCTGGAACAGTATC AGATATCTTCGGAAGACGTCCGATGCTGATAATGTCGTCAATTCTTTATCTTCTAAGCAGCATAATTATACTATGGGCTCCCAATGTTTATGTCCTACTT TTGGCGAGACTACTTGATGGTTTTGGAGTTGGTCTTGCTGTCACTCTTGTTCCTTTATATATATCTGAAACGGCTCCATCTGAGATGAGGGGGCAATTAA ATACACTTCCACAGTTTATGGGCTCAGGAGGAATGTTTTTGTCATATTGCATGGTGTTTTTCATGTCAATGATGGATTCACCAAGCTGGCGGCTGATGCT TGGGACTCTGTCAATCCCCGCTGTCATTTATCTAGCATTGACGCTTTTTTTCTTGCCTGAATCTCCAAGGTGGCTTGTGAGTAAAGGAAAGATGATCGAA GCTAAACAGGTTTTGCAGAGACTTCGTGGTAGGGAAGACGTTTCAGGTGAGCTGGCTTTGCTACTTGAAGGTCTTGGTGTTGGGACCGAAACAACAATAG AAGAGTACATTATTGGCCCAGCCAATGAGATCACTGGTGAAACTGATGCGAAAGAACATGTTAAATTATATGGGCCCGAGGAAGGTGTCTCGTGGATTGC CAAACCAGTCACCGCTGGATTCAGTAGTTTAGGGATGTTGTCCCGTAACGGCAGTTTGGTAAACCAAACCGTGCCTTTGATGGATCCACTTGTCACTCTA TTTGGAAGTGTCCATGAGAACATGCCTACAACGGGAAGCACACGCAGCTTGCTTTTTCCAAACACTGCAAGCATGGTGAGTGTTGGAGAAAATCAAGGTA GAAATGAACAGTGGGACGAAGAGGGCGACAAGGATGGCGAGGACTCTTATCCAGAAGCTTCTAGAGCTGATTCTGATGACAATTTGCGAAGCCCGTTACT ATCACACCAACATTCTAGCATGGAAAAGGGCATCAGTCATTGGCGCAATAGCAGCCTCGTAAATTCTGGGGAAGAAGGTGCGATGGGTATTGGTGGCGGA TGGCAGCTGGCATATAAATGGTCTGAGAAGATAGGTAAAGATGGTAGTAAGGAAGGAGGGCTTCAGAGGATATATTTGCACCAGGAAGGTACGATTGGTT CTCAGAAGCATTCAGTTACTTCCTCTGCTGGAATTGACATTCCTGAAGATGAGTTTGTACAAGCTGCTGCTCTGGTTAGCCAACCTGCTGTTTGTTCTAA GGACATACTGGGTCAAGCATCAGAAGGTCTAGCAGCTATTCACCCATCAGAAATTGCTGCTAAAGGTCCAAGCTGCGGTGACCTTTTTGAACCAGGAGTT AAGCGTGCATTGATTGTTGGAGTAGGGCTTCAAATACTCCAGCAGGTTGCTGGCATAAATGGTGTTCTCTACTACACACCCCAGATTCTTGAGCAAGCAG GGGTGGTAGTTCTTCTATCAAGTCTGGGCTTGAGTTCAGCTTCTGCATCTTACTTGATGAGTATTCTCACTACATTCTTGATGCTTCCTTGCATATTTCT TGCCATGAGACTAATGGATGTCTCTGGCAGAAGATCTATTTTGCTGTACACCATTCCTATCTTGGTAGCATCGCTAGTTGCTTTTGTCCTTGGCAGTATT GTCAACATGGACTCGTCTTTGAAAGCAGTGATCTCTACTGGCAGTGTTATGATCTATTTGAGTTGTTTCGTCATGGGCTTCGGAGTAATTCCAAACATCC TCTGTGCTGAAATTTTCCCGACTCGTGTTCGTGGCATTTGCATCACAATATGTTCTCTGACATATTGGATTGGAAACATCACGATCACGTACTCGCTTCC TGTTATGCTAAACTTCTTTGGCCTTTCTGGTGTCTTCACAATCTATGCCATTGGATGCGCGGTGTCATGGATTTTTGTTTTCTTGAAGGTTCCTGAGACA AAGGGCATGCCCCTTGAAGTCATCACCGAGTTCTTTGCTGTGGGTTCCAAGAATGATTGA
AA sequence Show only first row Show all	>Potri.005G098900.1 pacid=42804372 polypeptide=Potri.005G098900.1.p locus=Potri.005G098900 ID=Potri.005G098900.1.v4.1 annot-version=v4.1 MRGAVLVALAATVGNLLQGWDNSTIAGSIPYIKEELNLQSQPAVEGLIVAMSIIGGTTITTFSGTVSDIFGRRPMLIMSSILYLLSSIIILWAPNVYVLL LARLLDGFGVGLAVTLVPLYISETAPSEMRGQLNTLPQFMGSGGMFLSYCMVFFMSMMDSPSWRLMLGTLSIPAVIYLALTLFFLPESPRWLVSKGKMIE AKQVLQRLRGREDVSGELALLLEGLGVGTETTIEEYIIGPANEITGETDAKEHVKLYGPEEGVSWIAKPVTAGFSSLGMLSRNGSLVNQTVPLMDPLVTL FGSVHENMPTTGSTRSLLFPNTASMVSVGENQGRNEQWDEEGDKDGEDSYPEASRADSDDNLRSPLLSHQHSSMEKGISHWRNSSLVNSGEEGAMGIGGG WQLAYKWSEKIGKDGSKEGGLQRIYLHQEGTIGSQKHSVTSSAGIDIPEDEFVQAAALVSQPAVCSKDILGQASEGLAAIHPSEIAAKGPSCGDLFEPGV KRALIVGVGLQILQQVAGINGVLYYTPQILEQAGVVVLLSSLGLSSASASYLMSILTTFLMLPCIFLAMRLMDVSGRRSILLYTIPILVASLVAFVLGSI VNMDSSLKAVISTGSVMIYLSCFVMGFGVIPNILCAEIFPTRVRGICITICSLTYWIGNITITYSLPVMLNFFGLSGVFTIYAIGCAVSWIFVFLKVPET KGMPLEVITEFFAVGSKND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G098900 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G197600 [exp]	1.00	0.8360	Pt-TOPP4.1
AT4G09890			Protein of unknown function (D...		Potri.005G195800 [exp]	2.82	0.8321
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	2.82	0.7826
					Potri.015G099100 [exp]	3.00	0.8143
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	6.32	0.8070
AT4G34560			unknown protein		Potri.004G157300 [exp]	8.00	0.7487
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	9.48	0.7690
AT4G21450			PapD-like superfamily protein ...		Potri.019G116400 [exp]	12.72	0.7952
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	13.96	0.7062
AT1G77710			unknown protein		Potri.005G173800 [exp]	19.20	0.7781

Compare expression of checked genes

Potri.005G098900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.