Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) AT1G76410 145 / 4e-44 ATL8 RING/U-box superfamily protein (.1) AT2G17450 133 / 2e-39 RHA3A RING-H2 finger A3A (.1) AT4G35480 130 / 4e-38 RHA3B RING-H2 finger A3B (.1) AT3G18773 95 / 3e-24 RING/U-box superfamily protein (.1) AT5G05280 94 / 3e-24 RING/U-box superfamily protein (.1) AT1G49220 95 / 7e-24 RING/U-box superfamily protein (.1) AT1G49200 91 / 2e-22 RING/U-box superfamily protein (.1) AT1G49210 90 / 4e-22 RING/U-box superfamily protein (.1) AT5G01880 84 / 2e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064401 [exp] 189 / 3e-61 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 146 / 4e-44 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 140 / 8e-42 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 95 / 3e-24 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 94 / 8e-24 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 94 / 9e-24 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 92 / 2e-23 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 92 / 5e-23 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 90 / 3e-22 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013210 [exp] 157 / 3e-48 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10030728 [exp] 156 / 4e-48 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10016040 [exp] 147 / 2e-44 AT1G20823 202 / 4e-66 RING/U-box superfamily protein (.1) Lus10025162 [exp] 136 / 1e-40 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10006788 [exp] 94 / 1e-23 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10006787 [exp] 93 / 2e-23 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10005814 [exp] 93 / 3e-23 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005815 [exp] 93 / 3e-23 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10006785 [exp] 91 / 1e-22 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10025146 [exp] 89 / 3e-22 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G099000.1 pacid=42804879 polypeptide=Potri.005G099000.1.p locus=Potri.005G099000 ID=Potri.005G099000.1.v4.1 annot-version=v4.1 ATGCCTCGCTTTACCAGAATACTCAACACCAAGGCGGCTGAGCCACCAGCTGCGGTGAACCTGGAGTCCGACTTTGTCGTTATATTAGCAGCTCTTTTAT GTGCATTGATATGTGTGGTGGGCCTCATAGCGGCGGCTCGCTGTGCCTGGCTCCGCCGTGTCACCGGTGGCGCCTCCAGTGGACCACCTCCTCAGGCCAA AGCTAACAAGGGTGTGAAGAAGAAGAACCTCCAGCTTCTCCCCAGGTTCACTTACTCTGCTGGAGGTGGGGGCGCCACCACCAGTTTTGGAACAACAGAG TGTGCAATTTGCTTAGGTGAGTTTGTTGAAGGAGATGAAGTGAGGGTTTTGCCTCAGTGTGGACATGGATTCCATGTTGGATGCATTGACAAATGGCTCG GCTCTCATTCCTCTTGTCCCTCTTGCCGTCAGATTTTGGTGGTGGCTAGGTGTCAGAAATGTGGTCAGTTTCCTGCTTCCACCTCCTCCTCCTCTTGTGG TGGTGGAAATGCCACTGAGGTTGAGTTGAGCACTAGAGAAGATGGCAATGCCAATGATGGTAATATAAATCGTGCCAATGATGCAGGCGCTTTCTTGCCT TGA
AA sequence Show only first row Show all	>Potri.005G099000.1 pacid=42804879 polypeptide=Potri.005G099000.1.p locus=Potri.005G099000 ID=Potri.005G099000.1.v4.1 annot-version=v4.1 MPRFTRILNTKAAEPPAAVNLESDFVVILAALLCALICVVGLIAAARCAWLRRVTGGASSGPPPQAKANKGVKKKNLQLLPRFTYSAGGGGATTSFGTTE CAICLGEFVEGDEVRVLPQCGHGFHVGCIDKWLGSHSSCPSCRQILVVARCQKCGQFPASTSSSSCGGGNATEVELSTREDGNANDGNINRANDAGAFLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20823			RING/U-box superfamily protein...		Potri.005G099000 [exp]	0	1
AT5G50335			unknown protein		Potri.012G094000 [exp]	3.16	0.7582
AT5G47510			Sec14p-like phosphatidylinosit...		Potri.003G076200 [exp]	20.39	0.6083
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	21.67	0.5819
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	23.51	0.6548
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	25.92	0.6312
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.010G043200 [exp]	29.86	0.6740
AT4G27450			Aluminium induced protein with...		Potri.001G403000 [exp]	34.05	0.6727
AT1G56280		ATDI19	drought-induced 19 (.1.2)		Potri.012G086500 [exp]	39.68	0.5745
AT5G42680			Protein of unknown function, D...		Potri.002G128800 [exp]	40.00	0.5898
					Potri.017G040750 [exp]	42.21	0.6679

Compare expression of checked genes

Potri.005G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.