Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17500 475 / 1e-167 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 471 / 5e-166 Auxin efflux carrier family protein (.1) AT1G76520 318 / 6e-106 Auxin efflux carrier family protein (.1.2) AT1G20925 313 / 1e-102 Auxin efflux carrier family protein (.1) AT1G76530 286 / 7e-93 Auxin efflux carrier family protein (.1) AT5G01990 213 / 2e-64 Auxin efflux carrier family protein (.1) AT1G71090 177 / 1e-50 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 330 / 3e-110 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456400 [exp] 327 / 5e-109 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 322 / 6e-107 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 308 / 1e-101 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 301 / 1e-98 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 293 / 6e-96 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.001G125501 [exp] 217 / 9e-66 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 201 / 3e-60 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 187 / 5e-55 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001303 [exp] 476 / 9e-168 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 475 / 3e-167 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 471 / 9e-166 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 442 / 5e-147 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025166 [exp] 322 / 7e-107 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 292 / 3e-95 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 273 / 2e-87 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 200 / 1e-59 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 193 / 7e-55 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10019229 [exp] 166 / 1e-44 AT5G23490 667 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF03547 [poplar] [flax] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Potri.005G099300.17 pacid=42804425 polypeptide=Potri.005G099300.17.p locus=Potri.005G099300 ID=Potri.005G099300.17.v4.1 annot-version=v4.1 ATGGGTTTCTGGACTCTTTTTGAGGTGGCATCTTTGCCAATTATACAAGTCCTACTTATCAGCTTCTTTGGAGCTTTGATGGCAACTGAGTATTTGAATC TTCTCCCTAAGGATGCTAGAAAATCCTTAAATAAGCTCGTGTTCATGGTGTTTACACCCTCTCTCATGTTTGCTAGCCTGGCTAAAACTGTTACTCTCGA AGACATTATCTCATGGTGGTTTATGCCTGTTAACATTGGATTCACATTCTTAATTGGAGGCATTCTTGGATGGATACTTGTTAAAATACTGAGACCAAAG CCTTACCTAGAGGGCCTTGTTATTGCTACATGTTCATCAGGAAACTTGGGAAATCTTCTGCTCATAATTGTCCCTGCAATCTGTACTGAGGACGGAAGTC CATTTGGTGACAGTAGCATCTGCACCTCCGTTGGACTCTCATACGCTTCTTTCTCTATGGCGCTAGGAGGTTTCTTCATCTGGACTTATACATTCCATCT AATACGAACGTCGGCTGCAAAATTAAAAGCACTTCAAGCAGTAGTAGAGGTCTCAAAAGCACCCAACAATGATTTAGACGCTAGCCAGGAAACTCACCTG CTAATAGGACAAGATCAAGAAAATGTTGCAATAGTTGTTGCGTCATCCAAGTCTGCTGAAGATACAGAAAGCCGTGCTATTGTTTCCCAGGAATCAGAAC ATGGAAAAGGGAATGTATCATCCTGGACTAAATTAATAGGATTTCTTCATCAGATTTTAGAGGAGCTCTTGGCACCCCCAACTCTAGCTGCAATTTTGGG ATTCATCTTTGGAGCAACTACATTTTTGAGAAACCTGATAATTGGTTCAGAAGCCCCTCTAAGAGTGATCCAAGACTCCATCAAATTACTTGGAGATGGA ACCATTCCTTGTATAACTCTCATATTGGGAGGCAACCTAACCGAAGGCTTGCGCGCATCCAAAATCAAATCATGGATCGTTGTTGGGGTGATTTGTGTCC GATACATTATACTTCCTGCAATTGGTATGTGGGTTGTTAAAGCAGCTGGTCATCTTGGTTTTCTCCCATCAGACCCTCTCTTTCACTATGTTCTGATGAT TCAGTATACCCTTCCACCTGCCATGAATATTGGTACCATGACACAGTTGTTTAATGTGGGACAAGAAGAGTGCTCGGTCCTCTTCTTGTGGACATACTTA GTTGCAGCCTTGGCACTCACTGCCTGGTCTACAATTTTCATGTGGATCTTGTCCTGA
AA sequence Show only first row Show all	>Potri.005G099300.17 pacid=42804425 polypeptide=Potri.005G099300.17.p locus=Potri.005G099300 ID=Potri.005G099300.17.v4.1 annot-version=v4.1 MGFWTLFEVASLPIIQVLLISFFGALMATEYLNLLPKDARKSLNKLVFMVFTPSLMFASLAKTVTLEDIISWWFMPVNIGFTFLIGGILGWILVKILRPK PYLEGLVIATCSSGNLGNLLLIIVPAICTEDGSPFGDSSICTSVGLSYASFSMALGGFFIWTYTFHLIRTSAAKLKALQAVVEVSKAPNNDLDASQETHL LIGQDQENVAIVVASSKSAEDTESRAIVSQESEHGKGNVSSWTKLIGFLHQILEELLAPPTLAAILGFIFGATTFLRNLIIGSEAPLRVIQDSIKLLGDG TIPCITLILGGNLTEGLRASKIKSWIVVGVICVRYIILPAIGMWVVKAAGHLGFLPSDPLFHYVLMIQYTLPPAMNIGTMTQLFNVGQEECSVLFLWTYL VAALALTAWSTIFMWILS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	3.00	0.9155	CHI3.7
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	3.16	0.9127	Pt-MIPS.2
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G098200 [exp]	10.00	0.8630
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089400 [exp]	17.66	0.8331
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	20.49	0.9005	ANR/BAN2,Pt-BAN.1
AT1G10670		ACLA-1	ATP-citrate lyase A-1 (.1.2.3....		Potri.010G042700 [exp]	22.20	0.8571
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	24.18	0.8459
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.001G303900 [exp]	29.54	0.9097
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024150 [exp]	29.73	0.9083
AT2G27140			HSP20-like chaperones superfam...		Potri.012G070100 [exp]	30.33	0.8258

Compare expression of checked genes

Potri.005G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.