Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 614 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 597 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 594 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 319 / 3e-107 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 306 / 4e-102 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 282 / 5e-95 IDH-IV isocitrate dehydrogenase IV (.1) AT1G80560 111 / 3e-27 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14200 107 / 6e-26 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 107 / 1e-25 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064000 [exp] 652 / 0 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 619 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 615 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.006G126700 [exp] 323 / 8e-109 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 322 / 3e-108 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 115 / 1e-28 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028374 [exp] 630 / 0 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 628 / 0 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 582 / 0 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 522 / 0 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023192 [exp] 317 / 4e-106 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 316 / 4e-106 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 316 / 5e-106 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 311 / 4e-104 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 110 / 4e-26 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 99 / 1e-22 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.005G099600.1 pacid=42805693 polypeptide=Potri.005G099600.1.p locus=Potri.005G099600 ID=Potri.005G099600.1.v4.1 annot-version=v4.1 ATGGCGAGACGCTCCTTACCCCTTCTTAAACACCTCCTGTCCTCCCCCTCCCCCTCCCCCTCCACCACCCCCACCCTCCGCAGATCCGTAACCTATATGC CACGCCCTGGCGACGGGGAACCACGACCGGTAACCTTGATCCCCGGCGATGGAATCGGCCCTTTAGTCACCAACGCCGTCGAACAAGTCATGGAAGCAAT GCACGCGCCAGTATATTTCGAGAAATACGAGGTCCATGGCGACATGATGAGAGTGCCATCGGAAGTGATGGAATCGATCAAGAAAAACAAAGTCTGCTTG AAAGGAGGTTTGACGACGCCTATGGGAGGAGGAGTTAGTTCATTGAACTTGCAATTGAGGAAGGAGTTGGATTTGTATGCGTCGCTGGTGAACTGTTTTA ATCTGCCAGGGTTGCCTACGCGACACCAAAATGTTGATATTGTTGTTATTAGGGAGAATACGGAGGGGGAATATGCCGGCTTGGAGCATGAAGTGGTTCC TGGTGTTGTTGAGAGTCTCAAGGTGATAACAAAGTTCTGCTCAGAGCGCATTGCAAAATATGCTTTTGAGTATGCTTACCTGAATAACCGGAAGAAAGTG ACCGCTGTGCACAAAGCAAACATTATGAAGCTCGCAGATGGTTTGTTCTTGGAATCTTGTAGGGAAGTTGCTACAAAATATCCTGGAATCAAATACAATG AAATTATCGTGGACAATTGCTGCATGCAACTTGTCTCGAAGCCTGAGCAATTTGATGTCATGGTGACGCCTAATCTGTATGGCAATCTCGTTGCAAATAC AGCTGCAGGTATTGCTGGTGGCTCTGGAGTCATGCCAGGAGGCAATGTTGGGGCTGATCATGCTATATTTGAGCAAGGCGCTTCAGCAGGAAATGTAGGA AATGAGAAACTATTGGAACAGAAGACAGCAAACCCAGTTGCGGTGCTTCTCTCTTCTGCCATGATGCTAAGACATCTCCAGTTCCCTTCTTTTGCTGATC GATTAGAAACTGCAGTCAAACAGGTAATCTCAGAGGGCCGTTACCGAACAAAAGATCTAGGAGGATCCAGCACCACCCAAGAGGTTGTTGATGCAGTCAT AGGCGCTTTAGACTGA
AA sequence Show only first row Show all	>Potri.005G099600.1 pacid=42805693 polypeptide=Potri.005G099600.1.p locus=Potri.005G099600 ID=Potri.005G099600.1.v4.1 annot-version=v4.1 MARRSLPLLKHLLSSPSPSPSTTPTLRRSVTYMPRPGDGEPRPVTLIPGDGIGPLVTNAVEQVMEAMHAPVYFEKYEVHGDMMRVPSEVMESIKKNKVCL KGGLTTPMGGGVSSLNLQLRKELDLYASLVNCFNLPGLPTRHQNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKV TAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGSGVMPGGNVGADHAIFEQGASAGNVG NEKLLEQKTANPVAVLLSSAMMLRHLQFPSFADRLETAVKQVISEGRYRTKDLGGSSTTQEVVDAVIGALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	0	1
AT3G62370			heme binding (.1)		Potri.014G118600 [exp]	1.00	0.9022
AT5G46020			unknown protein		Potri.011G060800 [exp]	11.09	0.7995
AT5G23395		MIA40	mitochondrial intermembrane sp...		Potri.010G254600 [exp]	12.76	0.7634
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	14.14	0.7735
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	15.39	0.8555
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	18.11	0.7804	SDH2.1
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022500 [exp]	40.47	0.7994
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.007G064000 [exp]	40.81	0.7746
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	54.60	0.8144	Pt-BMY.1
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	60.99	0.8003

Compare expression of checked genes

Potri.005G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.