Plant FIBer expression Database

Potri.005G099800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66030 735 / 0 ATGRIP, GRIP Golgi-localized GRIP domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007427
[exp]
840 / 0 AT5G66030 841 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
Lus10010675
[exp]
707 / 0 AT5G66030 637 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
Lus10010676
[exp]
139 / 5e-38 AT5G66030 177 / 1e-52 Golgi-localized GRIP domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01465 GRIP GRIP domain
Representative CDS sequence
>Potri.005G099800.1 pacid=42803183 polypeptide=Potri.005G099800.1.p locus=Potri.005G099800 ID=Potri.005G099800.1.v4.1 annot-version=v4.1
ATGTCGACGGAGGAAAGTAGTAGTGTTGGTGAAATGCTGGAGAGTAAAACTGAAGATTCTCCCTTAAAGTTGGAGAAACAGCTGGCTGGTGATGTGCATA
TTAATGGGAATGTATTGAAGGAAAATGGGCTGTGTGATGATGGCAATGTGCTGGAAGAGAGCACGAATGAGCAGCTTTTGCTGATGGTTATTGAGCTGAA
ATTTCAGAATGAGTTCTTCAAGTCTCAGTTTGAGGGATTGAAGTCCCAGCAGGAAGCAGAAGAAAGTGGTCAGGAAAGTGGGGAGTCCGCAGATGTGAAA
GAATTACGTGAAAAGATCCAGTCTTTGAATAGAGAACTTAATGAGGAAAAACAGACACGGGGAGCAGCAGAGATTGCTTTGGAGCATCTCCGTGAGGAGT
ACTCTGACACAGATGCAAAAGCGCAAGAGCTTTCCTTGAAGCTTGCTGAAGCTCAACAGAAATTGGATCGAGAAATCAAAGACCGCGAGGAGAAATATAC
TGAACTTGATTCAAAGTTTCAAAGGCTTCATAAAAGAGCAAAACAACGCATTCAAGAGGTTCAAAAGGAAAAAGATGACCTTGAAGCCCGGTTTCGTGAT
GCAAATGAAGGTGCTAAGCAAGCATCATCAGAACAGTCATCTCTAAAGCAAGAGCTGGCGCGCACAAGACAACAAGCAAATGAAGCATTGAAGGCGATGG
ATGCAGAGAGACAACAATTAAGAAGTGCAAACAATAAACTCCGTGACAATATTGAGGAATTACGCTGTTCATTGCAACCTAAAGAAAGTGCTCTTGAGGC
ATTGCAACAAACGCTTTTAGAGAAAGAACAGATGTTGGAAGACATGCGAGGGATGCTACAATCTGCAGAAGAAAAAAAACAAGCTTCAATGACTGAGCTT
TCTGCTAAACATCAGAAAAGTATAGAGAACTTGGAAGGCCAAATTGCTGATGCTTTGACAGATAGGAACAAGGCTGCTGAAACTATATCCAAATTGCAGG
TTCTTGTCGCAGAGAAAGAGTCTAAGATTGCAGAGATGGATGCAGCCTCAAGTGGTGAGACAGCACGGTTAAGAGCTGCTTTGGAAAGTGTGAAAGGAGA
GCTTGCTCATCAAAAACACGAGCATGAGAAAGAAAAGGAGAGTTGGGAAGCTGCCTCCCAGGCACTGAAAACAAAGCTGGAAATAGCTGAGAGGAATTAC
ATACGTGCTGAAATTGAAGCAACTAAAATGAAAAGTCAACTGGAATTAGAAGTGTCTGTCCAAAGCCAGATGCTAAGTAAAAAAGATGCTGAACTATTGG
CTGTCAAAGAGGAGATCAACCGCCTTGAAAGTGAATTTTCCTCGTATAAGGTCCGTGCTCATACACTTCTTCAGAAGAAGGACGCAGAGCTAGCCGCGGC
TATGGACTCTGAACAACTTAAAGCTATTGAGGAAGCACTGAAAGAAGCTGAGACAGAAGTATCATTGGCATCTGTAGAAAGGGACAAGGCTCTTCAAGAT
CTTCAGGAAGCATTGGCTAATCATGATAAAGAACTTGCCACAAGAGATGCAGCTCTTAGCAGTGCCATGCAGCAGATAAAGAGCTTAGAAACAAAACTTG
ATTCTGCCAATGTTCATCTCCAATCAGAGAAAGAAACATGGAAAATAAACCTTCAGAATTTGGAAGAATCATGGCGATTGAGATGTGAAGCCCTGAAAGC
AGAAAAAGAAGTGCCTTCTGGACAAGATATACAGAGAGAACTAGAAGAGCTCGAACTACAGTATAAAAAACTCAAGGAAGAGCATGATTCATTCCGGGAA
CTTGCTGATAGAATGATGGAGGAGAAAGATAAAGAAATATCTAAACTTGTTGACTCCAACAGGAATCTTCATCAGTCAATGGAATCAAGACCCCGTGTTG
ATCATAGCGATGATAGCATCACAGCCATGCACAAACAAGATGGAGCAAATCTAAGTACCTCCATCGCAGAACAGCAGATTCTGCTATTGGCAAGGCAACA
AGCTCAGAGAGAGGAAGAGTTAGCACAATCTCAGCGGCATATTTTGGCACTTCAAGAGGAGATTGAGGAACTTGAACGGGAGAATCGTCTACACAGCCAA
CAGGAAGCAATGTTGAAGACTGAGCTTCGCAACATGGAAAGAACACAGAAAAGAGACGGTGTAGATTTGACATATCTAAAAAATGTCATCTTGAAGCTTC
TTGAAACAGGAGAAGTGGAAGCTCTCCTGCCTGTTGTGGCAATGCTTCTTCAATTTAGTCCTGAAGAGGTGCAAAAATGTCAAGCATACCGTGCATCTAC
TGATGTTCCACCAAGCCCAGCAAGTGACACTCCAGGATCCGGTCTGTCTCTTTTCTCGAGATTCTCATTTTCATAA
AA sequence
>Potri.005G099800.1 pacid=42803183 polypeptide=Potri.005G099800.1.p locus=Potri.005G099800 ID=Potri.005G099800.1.v4.1 annot-version=v4.1
MSTEESSSVGEMLESKTEDSPLKLEKQLAGDVHINGNVLKENGLCDDGNVLEESTNEQLLLMVIELKFQNEFFKSQFEGLKSQQEAEESGQESGESADVK
ELREKIQSLNRELNEEKQTRGAAEIALEHLREEYSDTDAKAQELSLKLAEAQQKLDREIKDREEKYTELDSKFQRLHKRAKQRIQEVQKEKDDLEARFRD
ANEGAKQASSEQSSLKQELARTRQQANEALKAMDAERQQLRSANNKLRDNIEELRCSLQPKESALEALQQTLLEKEQMLEDMRGMLQSAEEKKQASMTEL
SAKHQKSIENLEGQIADALTDRNKAAETISKLQVLVAEKESKIAEMDAASSGETARLRAALESVKGELAHQKHEHEKEKESWEAASQALKTKLEIAERNY
IRAEIEATKMKSQLELEVSVQSQMLSKKDAELLAVKEEINRLESEFSSYKVRAHTLLQKKDAELAAAMDSEQLKAIEEALKEAETEVSLASVERDKALQD
LQEALANHDKELATRDAALSSAMQQIKSLETKLDSANVHLQSEKETWKINLQNLEESWRLRCEALKAEKEVPSGQDIQRELEELELQYKKLKEEHDSFRE
LADRMMEEKDKEISKLVDSNRNLHQSMESRPRVDHSDDSITAMHKQDGANLSTSIAEQQILLLARQQAQREEELAQSQRHILALQEEIEELERENRLHSQ
QEAMLKTELRNMERTQKRDGVDLTYLKNVILKLLETGEVEALLPVVAMLLQFSPEEVQKCQAYRASTDVPPSPASDTPGSGLSLFSRFSFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66030 ATGRIP, GRIP Golgi-localized GRIP domain-co... Potri.005G099800
[exp]
0 1
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.001G185050
[exp]
2.00 0.7896
AT1G67140 SWEETIE SWEETIE, HEAT repeat-containin... Potri.004G101250
[exp]
7.21 0.7840
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Potri.008G012600
[exp]
8.48 0.7274 Pt-NTN2.3
AT1G71410 ARM repeat superfamily protein... Potri.013G098700
[exp]
9.38 0.7656
AT2G46180 GC4 golgin candidate 4 (.1) Potri.002G165500
[exp]
9.74 0.7815
AT4G38120 ARM repeat superfamily protein... Potri.001G454200
[exp]
10.09 0.7850
AT5G47490 RGPR-related (.1) Potri.003G077100
[exp]
11.31 0.7715
AT1G07910 ATRNL, RNL, AtR... ARABIDOPSIS THALIANA RNA LIGAS... Potri.016G083100
[exp]
13.78 0.7067
AT4G00800 SETH5 transducin family protein / WD... Potri.014G105601
[exp]
17.54 0.7488
AT3G33530 Transducin family protein / WD... Potri.018G128400
[exp]
17.88 0.7157

Potri.005G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.