Plant FIBer expression Database

Potri.005G099900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35630 647 / 0 PSAT phosphoserine aminotransferase (.1)
AT2G17630 647 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039587
[exp]
654 / 0 AT4G35630 673 / 0.0 phosphoserine aminotransferase (.1)
Lus10005333
[exp]
647 / 0 AT4G35630 677 / 0.0 phosphoserine aminotransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.005G099900.1 pacid=42804753 polypeptide=Potri.005G099900.1.p locus=Potri.005G099900 ID=Potri.005G099900.1.v4.1 annot-version=v4.1
ATGGCATCAAAACTAATCTTGTCATCACCAAACTCTCTCCTCCAAAATCCTAAACTCCAACACCACAACCATCATCTCCTCCTCAAACCCACCACCAATA
TGGCATCTTTCCCAAATTTAACCAATAAAGTTAAGGCCTTTTCAATCAAATGTGCAGCAACTACAGCAACCCCGCTTTCTCAAAGTCAAGATCTTGAAGA
GAGAGTCTTTAATTTTGCTGCAGGGCCTGCTACTTTACCTGAGAAAGTCTTAAAAAAGGCTCAATCTGAGCTTTATAATTGGCATGGATCTGGGATGAGT
GTAATGGAAATGAGCCATAGAGGGAAAGAATTTCTTTCTATTATTCAAAAGGCCGAGGCTGATCTCAGGGCCTTGTTGAATATTAGTGAAGATTACGCTG
TTTTGTTTCTTCAAGGTGGTGCCACTACACAATTTGCAGCCATTCCATTGAATCTGGTGAAACCTGAAGATTCTGTTGATTATGTTGTTACTGGATCATG
GGGAGATAAGGCCTTTAAGGAAGCTCAAAAGTACTCTAAACCAAAGGTGATCTGGTCAGGTAAATCTGAAAAGTATACAAAGATTCCATCTTTTGATAGT
TTGGAGCGAACCCCAGATTCTAAATATTTGCATATTTGTGCTAATGAGACAATTCATGGTGTTGAATTTAAGGATTACCCTGATCCTAAAAATGGGATCC
TGGTAGCTGATATGTCTTCAAACTTTTGTTCAAAACCTGTTGATGTTTCTAAGTTTGGTGTGATTTATGCTGGAGCTCAAAAGAATGTAGGCCCATCTGG
GGTTACTATTGTGATAATTAGGAAAGATTTGATTGGTAATGCACAAGGGATTACTCCTGTGATGTTGGATTATAAGATCCATGCAGAGAATAATTCACTT
TACAATACTCCACCTTGTTTTGGTATTTACATGTGTGGTCTAGTTTTTGACGATCTTTTGGCACAAGGTGGATTAAAGGAGGTTGAAAAGAGGAATAAGA
AGAAAGGTGATTTGCTTTATAATACTATCGATGAAAGCAAGGGGTTCTATAGGTGTCCTGTTGACAAATCTGTGAGGTCATTGATGAATGTGCCTTTTAC
ACTTGAGAAGTCGGAATTGGAGGCTGAGTTCATCAAAGAAGCTGCTAAGGAGAAGATGATTCAGCTCAAAGGGCATAGGTCAGTGGGAGGAATGAGAGCT
AGCATTTATAATGCAATGCCTTTGGCTGGTGTTGAAAAGCTGGTTGCTTTCATGAAGGATTTCCAGGCAAGGCATGCTTGA
AA sequence
>Potri.005G099900.1 pacid=42804753 polypeptide=Potri.005G099900.1.p locus=Potri.005G099900 ID=Potri.005G099900.1.v4.1 annot-version=v4.1
MASKLILSSPNSLLQNPKLQHHNHHLLLKPTTNMASFPNLTNKVKAFSIKCAATTATPLSQSQDLEERVFNFAAGPATLPEKVLKKAQSELYNWHGSGMS
VMEMSHRGKEFLSIIQKAEADLRALLNISEDYAVLFLQGGATTQFAAIPLNLVKPEDSVDYVVTGSWGDKAFKEAQKYSKPKVIWSGKSEKYTKIPSFDS
LERTPDSKYLHICANETIHGVEFKDYPDPKNGILVADMSSNFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIIRKDLIGNAQGITPVMLDYKIHAENNSL
YNTPPCFGIYMCGLVFDDLLAQGGLKEVEKRNKKKGDLLYNTIDESKGFYRCPVDKSVRSLMNVPFTLEKSELEAEFIKEAAKEKMIQLKGHRSVGGMRA
SIYNAMPLAGVEKLVAFMKDFQARHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35630 PSAT phosphoserine aminotransferase... Potri.005G099900
[exp]
0 1
AT4G14420 HR-like lesion-inducing protei... Potri.008G165200
[exp]
5.47 0.7329
AT4G34200 EDA9 embryo sac development arrest ... Potri.009G096600
[exp]
10.19 0.6914
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.008G099300
[exp]
11.31 0.7851 AdoMet1,SAMS.2
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Potri.008G068700
[exp]
15.49 0.7333
AT2G01140 PDE345 PIGMENT DEFECTIVE 345, Aldolas... Potri.008G125900
[exp]
18.00 0.7307
AT1G52760 LysoPL2 lysophospholipase 2 (.1) Potri.003G059200
[exp]
25.15 0.7589
AT1G76550 Phosphofructokinase family pro... Potri.002G003100
[exp]
29.10 0.6583
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Potri.015G125100
[exp]
33.49 0.7046 Pt-MP2.1
AT1G02500 METK1, AtSAM1, ... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.010G153500
[exp]
33.64 0.7550 Pt-SAMS.3,AdoMet3
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.013G004100
[exp]
37.01 0.7471 AdoMet_e2,Pt-SAMS.1

Potri.005G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.