Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYCMS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17620 459 / 1e-160 CYCB2;1 Cyclin B2;1 (.1) AT1G20610 457 / 1e-159 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 435 / 5e-151 CYCB2;4 CYCLIN B2;4 (.1) AT4G35620 434 / 9e-151 CYCB2;2 Cyclin B2;2 (.1) AT5G06150 254 / 3e-80 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G20590 239 / 9e-78 Cyclin family protein (.1) AT3G11520 246 / 2e-77 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT2G26760 229 / 3e-71 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G16330 224 / 8e-67 CYCB3;1 cyclin b3;1 (.1) AT4G37490 217 / 4e-66 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010000 [exp] 484 / 2e-170 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 463 / 5e-162 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 449 / 8e-157 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.016G033000 [exp] 245 / 9e-77 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 244 / 1e-76 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 241 / 2e-75 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.006G035200 [exp] 241 / 9e-75 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.010G173200 [exp] 210 / 2e-61 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 199 / 3e-57 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016015 [exp] 424 / 4e-147 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 418 / 1e-144 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 417 / 3e-144 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 390 / 1e-132 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10036080 [exp] 249 / 2e-78 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 239 / 2e-74 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10001765 [exp] 218 / 5e-63 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10003800 [exp] 209 / 1e-62 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10039033 [exp] 209 / 2e-62 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10010483 [exp] 181 / 1e-52 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G100000.1 pacid=42803584 polypeptide=Potri.005G100000.1.p locus=Potri.005G100000 ID=Potri.005G100000.1.v4.1 annot-version=v4.1 ATGGATGTATCTAATGGGAACAGTCTTAATCTCACCATCAAACCCACAGATTTTCAAGGATTAGAGATGGGTAACAGAAAGTTTGGACAGCAGATTAATA GGCAGAACAGGAGAGCTCTGAGTGTGTTGAATCAGAATTTTGTTGGAGGACAACAAGCATACCCTTGCGTTGTTAACAAGAGAGGATTGCAAGAAAACCG TGGTGTTTGTGAAGAACATCGACCCGTTACAAGGAAGTTCGCTGCTCAATTGTCAGGTACACAGCAGTATTGCCACCAGGAACTTAAGAAGCAGAAGCCA TCGGTTCAAAGAACAAATGAATTTGGAGATTGCATATTTGTTGATGTGGAAGAAAACAAGGCATCTTCCGCAGACCAACCAGTACCAATGTTCTTAGAGC AGACAGAAGCCAGGCCTGATGAAATGAACAAGATGGAGGAGGTTGAAATGGAGGATATAATTGAAGAACCAATTTTGAATATTGATGATTGTGATGCAAA GAACCCACTTGCAGTTGTTGACTATGTTGAAGATTTGCATGCGTACTACAGAAAAATGGAGAATTGTAGCTGTGTATCGCCGAACTATATGATGCAACAA GCTGACATTAATGAGAAGATGAGAGCCATCCTAATTGACTGGCTGATTGAGGTGCATGACAAGTTTGACCTAATGAAGGAGACATTGTTTCTAACTGTTA ATCTGATAGATAGATTTCTATCCCAGCAAACGGTAATGAGAAAAAAGCTTCAGTTGGTTGGCTTAGTTGCTATGCTCTTAGCATGCAAATACGAGGAGGT TTCTGTTCCAGTAGTGGGAGATTTAATTCTTATATCTGATAAAGCGTATGCTAGGAAAGAAGTCCTCGAAATGGAAAATTTGATGCTTAACAAATTGCAA TTTAACATGTCATTTCCTACACCATATGTTTTCATGCAAAGGTTCCTCAAGGCTGCCCAGTCTGATAAGAAGCTTGAGCTGCTGTCCTTCTTCTTGATTG AGCTTTCACTTGTGGAGTATGAGATGCTTAAGTTCCCACCATCATTGTTAGCAGCCTCAGCCATCTATACCGCTCAGTGCACCATCTATGGTTTCAAAGA GTGGAATAAAACCTGTGAATGGCATAGCAGCTACTCAGAAGAGCAGCTCTTAGAATGTTCAAGATTAATGGTTGGTTTCCACCAGAGGGCAGGGACGGGG AAACTCACTGGAGTATACAGGAAATACAACACATCCAAGTTTGGATTTACTTCAAAATGTGAAGCAGCACAGTTTCTATAG
AA sequence Show only first row Show all	>Potri.005G100000.1 pacid=42803584 polypeptide=Potri.005G100000.1.p locus=Potri.005G100000 ID=Potri.005G100000.1.v4.1 annot-version=v4.1 MDVSNGNSLNLTIKPTDFQGLEMGNRKFGQQINRQNRRALSVLNQNFVGGQQAYPCVVNKRGLQENRGVCEEHRPVTRKFAAQLSGTQQYCHQELKKQKP SVQRTNEFGDCIFVDVEENKASSADQPVPMFLEQTEARPDEMNKMEEVEMEDIIEEPILNIDDCDAKNPLAVVDYVEDLHAYYRKMENCSCVSPNYMMQQ ADINEKMRAILIDWLIEVHDKFDLMKETLFLTVNLIDRFLSQQTVMRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYARKEVLEMENLMLNKLQ FNMSFPTPYVFMQRFLKAAQSDKKLELLSFFLIELSLVEYEMLKFPPSLLAASAIYTAQCTIYGFKEWNKTCEWHSSYSEEQLLECSRLMVGFHQRAGTG KLTGVYRKYNTSKFGFTSKCEAAQFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	0	1	Pt-CYCMS1.1
AT4G15830			ARM repeat superfamily protein...		Potri.008G221700 [exp]	2.00	0.9800
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.016G033000 [exp]	4.24	0.9751
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	7.41	0.9550
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	7.74	0.9615
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	8.48	0.9610
AT2G42110			unknown protein		Potri.006G192500 [exp]	8.48	0.9593
AT1G67820			Protein phosphatase 2C family ...		Potri.010G047600 [exp]	10.48	0.9404
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	10.90	0.9602
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	14.49	0.9498	Pt-SYP111.1
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.004G062900 [exp]	15.96	0.9481

Compare expression of checked genes

Potri.005G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.