Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17580 461 / 6e-151 Polynucleotide adenylyltransferase family protein (.1) AT1G28090 349 / 4e-111 Polynucleotide adenylyltransferase family protein (.1.2.3) AT5G23690 318 / 5e-99 Polynucleotide adenylyltransferase family protein (.1) AT3G48830 287 / 5e-84 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164400 [exp] 345 / 3e-109 AT1G28090 569 / 0.0 Polynucleotide adenylyltransferase family protein (.1.2.3) Potri.012G105000 [exp] 312 / 6e-97 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.015G104300 [exp] 311 / 2e-96 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016699 [exp] 546 / 0 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1) Lus10036013 [exp] 331 / 7e-104 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016719 [exp] 309 / 4e-95 AT5G23690 635 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10035995 [exp] 109 / 3e-26 AT2G17580 75 / 6e-15 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01743 [poplar] [flax] PolyA_pol Poly A polymerase head domain CL0260 [poplar] [flax] PF12627 [poplar] [flax] PolyA_pol_RNAbd Probable RNA and SrmB- binding site of polymerase A
Representative CDS sequence Show only first row Show all	>Potri.005G100100.1 pacid=42804932 polypeptide=Potri.005G100100.1.p locus=Potri.005G100100 ID=Potri.005G100100.1.v4.1 annot-version=v4.1 ATGACAATACTCCAGAGAGGCAAAACACACTTAATTTCCCGTCTCAAATTTCTCACCCCTTTACAGAGATTCAACCATACTTTAACTAAAGAGGAATTAA AAGCACCAGTCTGCCATGAAATGGGTCGTGATTTTCTCGCTCAACAGAGATATGTTGTTGATAGATCAAAATGGAGAAAAGTGAATGCTAGGTATCATGG TATAACTCGTTCAATGATTCCTGATGCTCCATGGACGGTTTTGAAACTTTTGCGTGTTGGAGGATTTGAAGCATACTTAGTGGGTGGATGTGTGAGAGAT TTGCTTTTGAATAGAGTACCTAAAGATTTTGATGTGATCACCACAGCCAACCTTCAGCAGATAAAAAAGAAGTTTCATCGTGCTCATATTGTTGGACGAC GATTTCCTATATGCATAGTGCATGTCAAAGGATCAGTAATTGAGGTATCCAGTTTTGAGACAAGTGCACAACAGTGTCAGGAAAAAGAAAAGGTTCTTTT ATCTCAAATGCGAAGGAGCTGTGACGAAAAAGACTTCCTTCTCTGGAAAAATAGTATGCAGCGGGATTTCACAATTAATAGTTTGTTTTTTGACCCTTTC ATGAATCGCATATATGATTACGCCAATGGAATGGAAGATGTAAGGTCACTAAAGCTACAAACATTAATCCCTGCTCGACTGTCATTCCAAGAGGACTGTG CAAGAATCTTGCGGGGCATAAGAATTGCAGGTCGTCTAGGCTTGTCAATTTCTAAGGATACTGAAACTGCAATATGTAAACTTCAATCTTCTGTCAAGAG TCTGAACAAGGATAGGATAAAGATGGAACTGAACTACATGCTGTCCTATGGAGCTGCAGAGTCTACTATCCTTTTGCTCCAGAGATTCCACCTGCTTAAG ATATTTCTTCCCTTTCATGCAGCATACCTTCACGAACAGGCTGATGAAGTATCTGCTCAGGGTTCCACAATGTTGATGAAATTGTTATACAGTTTGGATA AAATAGTTAGCAGTGATCGACCTTGTGATTGCAGTCTATGGGTTGGACTGCTAGCCTTTCACCAAGCATTAGTACTTAATCCACAAGATGCTTTTGTAAT CTGGGCCTTTGCTTCTATACTATATTGTGGAACATGGCAGGAAGGTGTTAAATTTGCAAGAGAAAATGCAAAAGTGGAAGGGAGATTTGTACCAGAGATC TCTGGGTTCTCTGAAATTAAATCAGATGAAAAACTTGCTGAAGAAGTTTCTCAGTTAGCATCTTTAGTTCAAGATGCTGTAAATGCTTTTACAGATGAAA TTAGTTTATCTGAATCCCTGTCCAGATACCTGGACCCCCCCCTCGATGTTTTTGTGTTTGTATCAAAGAAAATAGGTGAACATGCTGGTCTTCTTTTTCA TATGCAATCTTGTGAATATAGAAGAGAGAGTTTCAAGATTGACTATGATCTGCTTGTGAAAGGGGATCTGTATGAGACTAGATTTGTCCTGGGCAAGGTT ATTTTGAAAACTTTGAGTGGTGGGCTTGTTCAAGGAGGAAAGGAGATTATCAAGGAGGAGTTAAAAGTCGTCAAGGTGAATCACGAGCCAACACTTTCTG ATCTGGCAAAGGATGGACGTGTGGTCAAGAAGGTGAAAGAACATGTTCTATTATCATTTGATGAACAAAAGATAGAGAAAGTGAAGCAGAAGGAAAAGGT AAAGATGAAATGCTCTTCAGAACAGAACATTAATAGCACGAAGGAAGAGGTAGATTTGAAAGATGCATCCATGGAGATAGCTAAGAAGCAGCGGAAGGTA GAGGAGAAATTATGTTCACCACTGCAGGAGAGTGATAAAAAGCAAGTGGCTGTTGGCGATGAGGAGCACCAGCATAGGGCTAAGAAGCATAGGAAGATGG TAGAGAAGGTGAAGCGCCACGAGTTATGTTATAAAGAAACGATAAATAGTATGAAGGAAGAGGTAGTTTTGCAAGATACACCCATGGAGATAGCTAAGGA GCTGCGGAAGGTGGTTGACACAAGGCAGGTTTCTGAGGAGAAATTTCATTCCCCACTGCAGGAGAGTGATAAAAAGCAAGTGGCTGTTGGCAATGAGGAG CACCAGCATAAGGCTAAGAAGCATAGGAAGATGGTAGAGAAGGTGAAGCACCACAAGTTATGTTATAAAGAAACAATAAATAGCATGAAGGAAGAGTTAG TTTTGAAAGATGCACCCATGGAGAAAGCTAAGATGCAGCGGAAGGTAGTTGACACAAGTCAGGTTTCCGAGGAGAAATTTCATTCACCGCTGCAGGAGAG TGATAAAAAGCAAGTGGCTGTTGGCAATGAGGAGCACCGGCATAGGGCTAAGAAGCATAGGAAGATGTTAGAGAAGGTAAAGCACCAGGATAAAGAAACG GAAGAGCCATTTAATGTAATAAGGAAGTGTAATCCAAGTGAGGATGAGAAAGTTAAGGGGGGAGAGAAAAACGATAGGCCTCCTGTATTGCAGGAGATGG TCAAGGAAAAAAGTGTCCAGTCTTGTCTATCCAGTCTCTTCAAGTGA
AA sequence Show only first row Show all	>Potri.005G100100.1 pacid=42804932 polypeptide=Potri.005G100100.1.p locus=Potri.005G100100 ID=Potri.005G100100.1.v4.1 annot-version=v4.1 MTILQRGKTHLISRLKFLTPLQRFNHTLTKEELKAPVCHEMGRDFLAQQRYVVDRSKWRKVNARYHGITRSMIPDAPWTVLKLLRVGGFEAYLVGGCVRD LLLNRVPKDFDVITTANLQQIKKKFHRAHIVGRRFPICIVHVKGSVIEVSSFETSAQQCQEKEKVLLSQMRRSCDEKDFLLWKNSMQRDFTINSLFFDPF MNRIYDYANGMEDVRSLKLQTLIPARLSFQEDCARILRGIRIAGRLGLSISKDTETAICKLQSSVKSLNKDRIKMELNYMLSYGAAESTILLLQRFHLLK IFLPFHAAYLHEQADEVSAQGSTMLMKLLYSLDKIVSSDRPCDCSLWVGLLAFHQALVLNPQDAFVIWAFASILYCGTWQEGVKFARENAKVEGRFVPEI SGFSEIKSDEKLAEEVSQLASLVQDAVNAFTDEISLSESLSRYLDPPLDVFVFVSKKIGEHAGLLFHMQSCEYRRESFKIDYDLLVKGDLYETRFVLGKV ILKTLSGGLVQGGKEIIKEELKVVKVNHEPTLSDLAKDGRVVKKVKEHVLLSFDEQKIEKVKQKEKVKMKCSSEQNINSTKEEVDLKDASMEIAKKQRKV EEKLCSPLQESDKKQVAVGDEEHQHRAKKHRKMVEKVKRHELCYKETINSMKEEVVLQDTPMEIAKELRKVVDTRQVSEEKFHSPLQESDKKQVAVGNEE HQHKAKKHRKMVEKVKHHKLCYKETINSMKEELVLKDAPMEKAKMQRKVVDTSQVSEEKFHSPLQESDKKQVAVGNEEHRHRAKKHRKMLEKVKHQDKET EEPFNVIRKCNPSEDEKVKGGEKNDRPPVLQEMVKEKSVQSCLSSLFK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	2.82	0.7798
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	3.31	0.7898
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	4.24	0.7274
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	7.74	0.7430
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	9.00	0.7783
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	9.27	0.6949
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.018G030300 [exp]	10.00	0.7154
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	14.24	0.7584
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.008G205600 [exp]	15.23	0.7089
AT4G20020			unknown protein		Potri.004G218650 [exp]	17.32	0.7590

Compare expression of checked genes

Potri.005G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.