Plant FIBer expression Database

Potri.005G100300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35700 68 / 4e-13 C2H2ZnF DAZ3 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
AT4G35610 67 / 1e-12 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
AT4G35280 63 / 3e-11 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
AT2G26940 56 / 4e-09 C2H2ZnF C2H2-type zinc finger family protein (.1)
AT2G17180 56 / 8e-09 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1)
AT5G56200 56 / 1e-08 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G166200
[exp]
65 / 7e-12 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Potri.004G205300
[exp]
63 / 4e-11 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Potri.001G224600
[exp]
58 / 2e-09 AT5G56200 71 / 8e-13 C2H2 type zinc finger transcription factor family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016698
[exp]
76 / 8e-16 AT4G35700 74 / 4e-15 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
Lus10035994
[exp]
76 / 1e-15 AT4G35610 68 / 5e-13 zinc finger (C2H2 type) family protein (.1)
Lus10041659
[exp]
72 / 3e-14 AT4G35700 72 / 2e-14 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
Lus10023932
[exp]
63 / 2e-11 AT4G35280 126 / 2e-35 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Lus10041633
[exp]
49 / 1e-06 AT4G35700 48 / 2e-06 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G100300.1 pacid=42803216 polypeptide=Potri.005G100300.1.p locus=Potri.005G100300 ID=Potri.005G100300.1.v4.1 annot-version=v4.1
ATGACTAACAACAACAACAACAACAATAACAAGGATGCTGCTGCCATCCCTGATAAGGCCAATGAGCATTCAGAAGCAGCCAACAGCCCTAGAAGAAACC
TCAACGATCAAGAGGAGGCTATCGCCCCACCAAGGCCAACAGTCCAACGGTCTACTGTCGAAACCGGTGGACCTTCTTCTGTTTCTGGTCCTGCCAGGCC
GGCAGGAACTGAAGTTGGTGCATCTCCTGCTGCCGTGACTTTAACTGGTGGTGCTAGCCCATCAACTCCTGTAAGAATTGGAGGGAGTGGTACTGCTGCT
GTTGATCCCAGTACTGTTGCTGCTACTGTAGTGGCTGGAGAAGGGTCGTCCTTGAGAAAACGATCTGGAAAGGGTGAAGAGAGCAGTCCTCATGTGTCCA
AGAAGGCTAAGGGAGAGATGGACATTAATCCTGACGCTGAACCGACGTGCTCTACATGTGGCCGAACATTTGCCTCCTGGAAGGCGGTATTTGGTCATAT
GCGTGCACACCCTGATCGCGGCTGGAGAGGTGCCTTCCCCCCTCCGGAATGGTCTCCAGAAAAGCCTAATGACCAGCAGGGAGATCAAAGTGCTCTACGA
AGCCAATTAGCACCAAGGCTGCTAAGTTTGGCAATAGACACTCTAAATCAGATGAAGCACGATCAAGGTCATGAGGCTGGTTCTTCGACAAATCGAAGAA
ACTTTGATTTGAATACGGAACCACCGAGAGAATCAGAAAGTAATTCTGGATCTTCTTCTCCCCCAAGCAGTGGAAACCGGTTTGATCTTAATAAACCTCC
GAAAGCTGATCATAACAATGGCAACGAGGGAGCATCCAAATAA
AA sequence
>Potri.005G100300.1 pacid=42803216 polypeptide=Potri.005G100300.1.p locus=Potri.005G100300 ID=Potri.005G100300.1.v4.1 annot-version=v4.1
MTNNNNNNNNKDAAAIPDKANEHSEAANSPRRNLNDQEEAIAPPRPTVQRSTVETGGPSSVSGPARPAGTEVGASPAAVTLTGGASPSTPVRIGGSGTAA
VDPSTVAATVVAGEGSSLRKRSGKGEESSPHVSKKAKGEMDINPDAEPTCSTCGRTFASWKAVFGHMRAHPDRGWRGAFPPPEWSPEKPNDQQGDQSALR
SQLAPRLLSLAIDTLNQMKHDQGHEAGSSTNRRNFDLNTEPPRESESNSGSSSPPSSGNRFDLNKPPKADHNNGNEGASK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35700 C2H2ZnF DAZ3 DUO1-activated zinc finger 3, ... Potri.005G100300
[exp]
0 1
AT1G43760 DNAse I-like superfamily prote... Potri.005G151350
[exp]
27.92 0.6429
Potri.002G131650
[exp]
28.14 0.6793
Potri.011G165750
[exp]
29.08 0.6447
AT5G55590 QRT1 QUARTET 1, Pectin lyase-like s... Potri.001G365700
[exp]
29.15 0.6472
Potri.019G014350
[exp]
32.78 0.5999
Potri.001G165120
[exp]
44.07 0.5883
AT1G43760 DNAse I-like superfamily prote... Potri.015G069301
[exp]
46.28 0.5659
AT1G16360 LEM3 (ligand-effect modulator ... Potri.001G337466
[exp]
49.56 0.5522
AT5G34883 Protein of unknown function (D... Potri.018G045400
[exp]
53.38 0.5265
AT5G28780 PIF1 helicase (.1) Potri.001G165240
[exp]
55.64 0.5639

Potri.005G100300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.