Plant FIBer expression Database

CAT2 (Potri.005G100400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CAT2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35090 958 / 0 CAT2 catalase 2 (.1.2)
AT1G20630 912 / 0 CAT1 catalase 1 (.1)
AT1G20620 842 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G251600
[exp]
952 / 0 AT4G35090 944 / 0.0 catalase 2 (.1.2)
Potri.002G009800
[exp]
950 / 0 AT4G35090 960 / 0.0 catalase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012258
[exp]
943 / 0 AT4G35090 945 / 0.0 catalase 2 (.1.2)
Lus10030745
[exp]
934 / 0 AT4G35090 947 / 0.0 catalase 2 (.1.2)
Lus10013225
[exp]
930 / 0 AT4G35090 942 / 0.0 catalase 2 (.1.2)
Lus10016017
[exp]
823 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00199 Catalase Catalase
PF06628 Catalase-rel Catalase-related immune-responsive
Representative CDS sequence
>Potri.005G100400.9 pacid=42802898 polypeptide=Potri.005G100400.9.p locus=Potri.005G100400 ID=Potri.005G100400.9.v4.1 annot-version=v4.1
ATGGATCCTTACAAGTATCGTCCATCAAGTTCTTACAACTCTCCGTTCTTCACTACAAATTCTGGTGCTCCAGTTTGGAATAATAACTCATCGCTTACTG
TTGGTTCCAGAGGTCCGATTCTGCTTGAGGACTATCATTTGGTGGAGAAACTTGCTAATTTTGACAGGGAAAGAATCCCAGAACGTGTTGTTCATGCTAG
AGGTGCGAGTGCTAAAGGGTTTTTTGAAGTGACCAATGATATATCTCATCTCACTTGTGCTGATTTCCTTAGAGCCCCTGGAGTCCAGACCCCTGTTATT
GTCAGGTTTTCTACTGTTATCCATGAACGCGGCAGTCCTGAAACTCTAAGAGACCCCAGAGGTTTTGCTGTGAAATTCTACACTAGAGAGGGAAATTTTG
ATCTGGTCGGCAACAATTTCCCAGTCTTCTTCATTCGTGATGGGATGAAGTTCCCTGATATGGTTCATGCCCTCAAGCCCAACCCTAAATCACACATTCA
GGAAAACTGGAGGATACTTGACTTCTTCTCACACCATCCCGAGAGCTTGCACATGTTCTCCTTCCTGCTTGATGACATTGGTGTTCCACAAGATTACAGG
CACATGGAAGGCTCTGGTGTTAACACCTATACTCTAATCAACAAGGCTGGGAAGGCATATTATGTGAAATTCCACTGGAAACCAACATGTGGGGTCAAGT
CTTTATTGGAAGACGAGGCCATAAAAGTTGGCGGATCCAATCACAGTCATGCCACACAGGATCTCTATGACTCCATCAAGGCTGGAAACTACCCTGAGTG
GAAGCTTTTCATTCAAATAATTGATCCAGCTGATGAAGACAAGTTTGACTTTGACCCACTTGATGTAACCAAGACTTGGCCTGAAGACATCTTGCCTTTG
ATGCCTGTGGGCCGCTTGGTGTTGAACAAGAATATTGATAACTTCTTTGCGGAGAACGAGCAGCTAGCATTTTGCCCTGCTATTATAGTGCCTGGTATCT
ACTATTCGGATGATAAGTTGCTGCAAACTAGAATCTTCTCGTATGCTGATACTCAGAGGCACCGCCTTGGGCCAAATTATCTCCAGCTTCCAGCAAATGC
TCCAAAGTGTGCTCATCACAACAATCACCATGAAGGTTTCATGAATTTTATGCATAGGGACGAGGAGGTCAATTACTTCCCCTCAAGGTTTGATCCTGTC
CGTCATGCTGAGAGATACCCTAATCCTTCTGTCATTCACACTGGCAAGCGTGAGAAGTGCATAATTGAGAAGGAGAATAACTTCAAGCAGCCTGGCGAGA
GATACCGTTCATTTTCACCAGACAGGAAAGAGCGCTTCGTTCGCCGTTGGGTTGAGGCCTTGTCTGACCCAAGGGTTACATATGAAATCCGCAGTATTTG
GATATCATACTGGTCTCAGGCTGACAAGTCTCTGGGTCAGAAGCTTGCTTCTCACCTCAATATGAGGCCAAGCATTTGA
AA sequence
>Potri.005G100400.9 pacid=42802898 polypeptide=Potri.005G100400.9.p locus=Potri.005G100400 ID=Potri.005G100400.9.v4.1 annot-version=v4.1
MDPYKYRPSSSYNSPFFTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTNDISHLTCADFLRAPGVQTPVI
VRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLLDDIGVPQDYR
HMEGSGVNTYTLINKAGKAYYVKFHWKPTCGVKSLLEDEAIKVGGSNHSHATQDLYDSIKAGNYPEWKLFIQIIDPADEDKFDFDPLDVTKTWPEDILPL
MPVGRLVLNKNIDNFFAENEQLAFCPAIIVPGIYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPV
RHAERYPNPSVIHTGKREKCIIEKENNFKQPGERYRSFSPDRKERFVRRWVEALSDPRVTYEIRSIWISYWSQADKSLGQKLASHLNMRPSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35090 CAT2 catalase 2 (.1.2) Potri.005G100400
[exp]
0 1 CAT2
AT1G68010 ATHPR1, HPR hydroxypyruvate reductase (.1.... Potri.004G175800
[exp]
1.00 0.9901 Pt-HPR.1
AT1G79040 PSBR photosystem II subunit R (.1) Potri.011G142200
[exp]
2.00 0.9869
AT5G38660 APE1 acclimation of photosynthesis ... Potri.017G112700
[exp]
4.00 0.9788
AT3G26650 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEH... Potri.014G140500
[exp]
6.00 0.9814
AT3G14420 Aldolase-type TIM barrel famil... Potri.011G112700
[exp]
6.48 0.9807
AT3G26650 GAPA-1, GAPA GLYCERALDEHYDE 3-PHOSPHATE DEH... Potri.002G220566
[exp]
7.41 0.9808
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.005G010266
[exp]
12.44 0.9658
AT3G14420 Aldolase-type TIM barrel famil... Potri.001G394400
[exp]
12.64 0.9759
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Potri.005G254100
[exp]
13.26 0.9725 Pt-GAPB.2
AT2G26500 cytochrome b6f complex subunit... Potri.004G147300
[exp]
14.49 0.9728

Potri.005G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.