Plant FIBer expression Database

Potri.005G100750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G100700
[exp]
75 / 8e-18 AT1G64160 50 / 1e-07 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Potri.005G100600
[exp]
46 / 4e-07 AT1G58170 54 / 4e-09 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G100750.2 pacid=42803406 polypeptide=Potri.005G100750.2.p locus=Potri.005G100750 ID=Potri.005G100750.2.v4.1 annot-version=v4.1
ATGACCCTGATCTTTCCATTAACGACACCAGAGATGACCATGGCTCAATCTCCACCCCTCTATCTTCTCGCTATCTTATTTTTTGCTCTTTTATTCAAGG
GCACGTCCAGCACCCAGCAAAACCACAACAAACTCAAATCCCTTCACTACTTTGTTCTCTGCGAACATGCCACTCGGAATAAAACCGGGTATATCATCGT
GAATGGTGTGGCTGGACCAAATCTGCCTCACACCACATCAACTCTCGGCACCTTGCATGTTTTTCGAGAGCCCATGATTGTTACATCCGACCCATCTTCT
AAAGTTGCTGTTACTGTTTAA
AA sequence
>Potri.005G100750.2 pacid=42803406 polypeptide=Potri.005G100750.2.p locus=Potri.005G100750 ID=Potri.005G100750.2.v4.1 annot-version=v4.1
MTLIFPLTTPEMTMAQSPPLYLLAILFFALLFKGTSSTQQNHNKLKSLHYFVLCEHATRNKTGYIIVNGVAGPNLPHTTSTLGTLHVFREPMIVTSDPSS
KVAVTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G100750
[exp]
0 1
AT1G13940 Plant protein of unknown funct... Potri.006G262600
[exp]
3.46 0.9500
AT1G76430 PHT1;9 phosphate transporter 1;9 (.1) Potri.002G005500
[exp]
8.24 0.9350 PtrPHT1-9
Potri.012G120584
[exp]
10.72 0.9176
AT5G53350 CLPX CLP protease regulatory subuni... Potri.015G012900
[exp]
11.83 0.9180
AT5G52660 MYB Homeodomain-like superfamily p... Potri.017G146800
[exp]
15.55 0.9039
AT5G52780 Protein of unknown function (D... Potri.004G072900
[exp]
16.61 0.9209
AT3G52105 unknown protein Potri.006G054200
[exp]
16.73 0.9104
AT3G46540 ENTH/VHS family protein (.1) Potri.001G239200
[exp]
17.60 0.9040
AT2G16980 Major facilitator superfamily ... Potri.004G178600
[exp]
19.79 0.9160
AT4G18960 MADS AG AGAMOUS, K-box region and MADS... Potri.011G075800
[exp]
20.04 0.9165 AG1.1

Potri.005G100750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.