Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 156 / 3e-45 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 149 / 2e-42 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58770 80 / 1e-16 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 79 / 2e-16 ACPT cis-prenyltransferase (.1) AT5G58784 79 / 3e-16 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 77 / 1e-15 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58782 75 / 5e-15 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23400 71 / 9e-14 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039400 [exp] 158 / 4e-46 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 79 / 4e-16 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.009G045500 [exp] 71 / 2e-13 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 69 / 9e-13 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002788 [exp] 238 / 9e-77 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10032757 [exp] 238 / 1e-76 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 225 / 1e-70 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10038313 [exp] 88 / 2e-19 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10036178 [exp] 87 / 1e-18 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [poplar] [flax] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.005G100800.10 pacid=42802474 polypeptide=Potri.005G100800.10.p locus=Potri.005G100800 ID=Potri.005G100800.10.v4.1 annot-version=v4.1 ATGGACAAACACCGTGGTAGTAGATTAAGTGAGCTGTTTGGTAGTTTGGGTAGTTTCTTCAGAAAATGCATGTTTTGCATTCTATCTATGGGTCCCATCC CCAACCATTTTGCTTTCATAATGGATGGAAATAGAAGATATGCTAAGAAGGAAAAATTGGAAGAAGGTGCTGGTCACAGAGCAGGATTTTCAGTTCTTAT GTCCATGCTTAAGTACTGCTATGAGTTGGGAGTAACTTATGTCACTATTTATGCCTTCAGCATTGAGAATTTCAAAAGGAAGCCTGATGAGGTTCAGAAC CTGATGGATCTGATTCTGGAGAAGATTGAAGGGTTGCTCAAGGAAGAAAGCCTTGTGAACAAATATGGTATCAGGGTGTATTTTATTGGTAATTTGAAAC TTTTGAGCAAGCCTGTCAGGGTGGCAGCAGAAAAGGTTATGAAGGCTACTGCTAACAACACCAAGTGTGTGCTTTTGATCTGCATAGCCTATACTTCATG TGATGAGATTGTGCAAGCTGTCCATGAATCCTGTAAAAATAAGTGGGAGGAAATTCAACCTTGTAACTCACATAAAAGTTTCAGTGGTAGGGTTGAAGAA GTAGATGGCAAAAGCATAGATGATGGCATTGGCCACAGTGTTCAAGAATTGTTTGGAGTTCAAACAAATGAATTACGAGCAACAAGGGCAAGCACATTCT GTAATGACGTGGCCAATGGAGTAGAAAGGACTGATAAAAAAAGTGGTGTGGTTGGGCATGCTGTCCATGGATCCTGTGATAAATGGGGTGAAGTTCAATC ATTGGAGGCAAGTAGAACCGGAGATGGTGTGATTCCAAATGTAAAGAGTGAGAAATTGCTGGTGGATCTTTCGATATTAAAGGTGGTTGACATTGAGAGC CACATGTATATGTCAGTAGCTCCCAATCCTGACATTGTGATCCGAAGTTCTGGGGAGACCCGCCTCAGTAACTTCCTACTTTGGCAAACTAGTAACTGCC TGTTGTATTCTCCAAATGCACTATGGCCAGATATGAGGTTGTGGCACTTGGTGTGGGCAGTCTTAGACTTCCAGCGCAATCATTCTTATTTTGAGAAGAA AAAGAAGCAGTTTTAA
AA sequence Show only first row Show all	>Potri.005G100800.10 pacid=42802474 polypeptide=Potri.005G100800.10.p locus=Potri.005G100800 ID=Potri.005G100800.10.v4.1 annot-version=v4.1 MDKHRGSRLSELFGSLGSFFRKCMFCILSMGPIPNHFAFIMDGNRRYAKKEKLEEGAGHRAGFSVLMSMLKYCYELGVTYVTIYAFSIENFKRKPDEVQN LMDLILEKIEGLLKEESLVNKYGIRVYFIGNLKLLSKPVRVAAEKVMKATANNTKCVLLICIAYTSCDEIVQAVHESCKNKWEEIQPCNSHKSFSGRVEE VDGKSIDDGIGHSVQELFGVQTNELRATRASTFCNDVANGVERTDKKSGVVGHAVHGSCDKWGEVQSLEASRTGDGVIPNVKSEKLLVDLSILKVVDIES HMYMSVAPNPDIVIRSSGETRLSNFLLWQTSNCLLYSPNALWPDMRLWHLVWAVLDFQRNHSYFEKKKKQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	0	1
AT4G08330			unknown protein		Potri.014G197000 [exp]	7.54	0.8690
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	8.00	0.9217
AT1G53290			Galactosyltransferase family p...		Potri.001G392700 [exp]	11.61	0.9091
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.004G204400 [exp]	12.16	0.8759	SLY1.1
AT4G01400			unknown protein		Potri.002G179600 [exp]	12.48	0.9063
AT1G21370			unknown protein		Potri.002G071300 [exp]	14.49	0.8734
AT2G04890	GRAS	SCL21	SCARECROW-like 21 (.1)		Potri.019G085600 [exp]	16.49	0.8770
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.006G157000 [exp]	16.94	0.9044
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	17.26	0.9139
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	19.36	0.9068	Pt-FLA11.1

Compare expression of checked genes

Potri.005G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.