Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35590 273 / 6e-90 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT1G18790 98 / 1e-23 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT1G74480 98 / 2e-23 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G66990 92 / 2e-21 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT5G53040 86 / 2e-19 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT2G17150 47 / 9e-06 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G38340 46 / 2e-05 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35270 46 / 3e-05 NLP2 Plant regulator RWP-RK family protein (.1) AT1G20640 46 / 3e-05 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G64530 46 / 3e-05 NLP6 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011800 [exp] 95 / 1e-22 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.012G016800 [exp] 92 / 1e-21 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.006G223100 [exp] 61 / 4e-10 AT5G16100 72 / 7e-14 unknown protein Potri.016G042900 [exp] 57 / 8e-09 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 52 / 5e-07 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G293300 [exp] 50 / 2e-06 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 50 / 2e-06 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G058800 [exp] 48 / 3e-06 AT1G06500 95 / 4e-24 unknown protein Potri.009G087500 [exp] 48 / 5e-06 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005921 [exp] 88 / 1e-19 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10019100 [exp] 88 / 1e-19 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10034456 [exp] 83 / 9e-18 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10035008 [exp] 81 / 5e-17 AT1G18790 145 / 6e-42 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10004035 [exp] 59 / 1e-09 AT5G16100 68 / 2e-12 unknown protein Lus10014429 [exp] 50 / 1e-06 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 50 / 1e-06 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 49 / 4e-06 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10022621 [exp] 47 / 2e-05 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 46 / 4e-05 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.005G101000.2 pacid=42805144 polypeptide=Potri.005G101000.2.p locus=Potri.005G101000 ID=Potri.005G101000.2.v4.1 annot-version=v4.1 ATGGCCTCTTCTTTGATAGCTCTATTAGTCTTTGAGAACAATATCAATAAAGAGTTGGTAAGAAGCTTGCATGTTTACAGATTGAAGGATGGGAAGGAAA AGGAAGTTGAGAGGGAGTTTGTTTTCTCTGTGGATGGTCCATATGTTGAAATGAAAGCAGGCCCAATTCTTAGATTGAGGAGATTTCAGGTTTTGGAGCT CTTTGAAGGGCAAGTGATTGGTTTGTGGCGTTGCATATTTGCATTTCATGTCAATAACCCTCCTCATTTGAGCCACAGTTCTTTTCTACTCTCAGTTTCT AGAAACCCCAAGCTGAAGTCAATTCCAACACTGGCCAAAGATATCCATTTCATTTTGAAGTTGAGCTGCAAAACTGACAATGAAGAGCCATCAAGGTTTT CATCCAAAGAAATATGTGAAGTGGACAGAGATAATTGCCATCAGTCAAAGAAAAGTCTGCCTGTATTAGACCAGGATCTTAACTGCCTTCCTAATTCAGT TTCTCCATCTGAATTATCAAAAAGCGAACAAATTGAACTGTGCGCAGCAGGTGTTATGGAAAAGAAGAAAAAAAGAGCAGCTAGTGAAGACATTGCTAGA ATTGCTTTAGAAGATGTCGTTAAATGCTTTGGTCTACCAATTGTGGAAGCTTCAAGAAATTTAAAAGTTGGTCTCACAGTGCTGAAGAGAAAGTGCAGGG AATTAGGCATCCCTCGCTGGCCGCATAGGAAGATCAAATCCCTTGACAGTCTCATTTGTAGTCTCCAGGAAGAGGCAGAAAGGCATAAACAAGATAACGA GGATACAACTATGGCAGTGGCCAAGAGGCGAAGGATGCTGGAGAGGGAAAAGGAAACTATAGAGAAGAAGCCATTCATGGAAATACAAAGTGAGACCAAA AGATTCAGGCAAGATGTTTTCAAAAGAAGGCACAGAGCCAGAGCTCTTGGAAACCAGGGTCTATAA
AA sequence Show only first row Show all	>Potri.005G101000.2 pacid=42805144 polypeptide=Potri.005G101000.2.p locus=Potri.005G101000 ID=Potri.005G101000.2.v4.1 annot-version=v4.1 MASSLIALLVFENNINKELVRSLHVYRLKDGKEKEVEREFVFSVDGPYVEMKAGPILRLRRFQVLELFEGQVIGLWRCIFAFHVNNPPHLSHSSFLLSVS RNPKLKSIPTLAKDIHFILKLSCKTDNEEPSRFSSKEICEVDRDNCHQSKKSLPVLDQDLNCLPNSVSPSELSKSEQIELCAAGVMEKKKKRAASEDIAR IALEDVVKCFGLPIVEASRNLKVGLTVLKRKCRELGIPRWPHRKIKSLDSLICSLQEEAERHKQDNEDTTMAVAKRRRMLEREKETIEKKPFMEIQSETK RFRQDVFKRRHRARALGNQGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35590		RKD5	RWP-RK domain-containing 5, RW...		Potri.005G101000 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035400 [exp]	7.14	0.8009
					Potri.011G149950 [exp]	7.48	0.7877
AT1G30760			FAD-binding Berberine family p...		Potri.011G161400 [exp]	12.16	0.8076
AT3G61420			BSD domain (BTF2-like transcri...		Potri.005G061366 [exp]	22.62	0.8004
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.008G080401 [exp]	24.79	0.7924
AT4G10590		UBP10	ubiquitin-specific protease 10...		Potri.016G067400 [exp]	33.31	0.7919
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Potri.005G008050 [exp]	52.99	0.7706
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Potri.002G104000 [exp]	53.32	0.6738
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Potri.005G202700 [exp]	57.15	0.6334
AT4G36050			endonuclease/exonuclease/phosp...		Potri.005G113250 [exp]	62.22	0.6626

Compare expression of checked genes

Potri.005G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.