Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66010 343 / 3e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G20890 206 / 8e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G41690 44 / 8e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G55340 41 / 0.0005 PHIP1 phragmoplastin interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258000 [exp] 245 / 2e-81 AT3G20890 357 / 6e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G053200 [exp] 245 / 2e-81 AT3G20890 353 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009943 [exp] 244 / 9e-81 AT3G20890 328 / 9e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030139 [exp] 241 / 2e-79 AT3G20890 315 / 2e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030140 [exp] 223 / 8e-73 AT3G20890 300 / 8e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009942 [exp] 222 / 1e-71 AT3G20890 313 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.005G101200.1 pacid=42803619 polypeptide=Potri.005G101200.1.p locus=Potri.005G101200 ID=Potri.005G101200.1.v4.1 annot-version=v4.1 ATGTACGGATCCAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAGGTCGGCTCAAAGAGACAAAGAATGATGGAATCAAATCCCTACT TCGCAGTGAGCAGTGGTGCGAGTGGCTTTCAACCTTATGGATACGGTGGTGGATTTCAGCCCCCACCCTTTCCTGTGGTTCGTCTGAGGGGGCTTCCTTT CAACTGCTCAGATGTTGAGATTCTCAAGTTCTTTGCTGGATTGGATATTGTGGATGTCTTGCTGGTCAACAAGAGTGGGCGGTTCACTGGAGAAGCTTTT GTTGTCTTTGCTGGACCTATGCAGGTTGAGTTTGCTTTACAGAGGGATCGACAAAACATGGGACGGAGGTATGTGGAAGTTTTTAGGTGCAAGAGGCAGG ATTATTACAACGCTGTTGCTGCGGAGGTGAATTATGAAGGAATCTATGACAATGATTACCATGGAAGTCCTCCTCCATCTAGAGCAAAGAGGTTCAGTGA TAAGGATCAAATGGAATACACAGAGATCTTGAAGATGCGGGGTCTCCCCTTTTCTGCAAAAAAAGCTGAAATAATTGAATTCTTCAAAGACTTTAAGCTC ATTGATGAAAGGATACACATTGCATGCCGCCCAGATGGGAAAGCTACTGGAGAGGCATATGTAGAGTTCATTTCTGCTGAGGAGGCCAAAAGAGCTATGA GCAAGGACAAGATGACAATTGGATCGAGGTATGTTGAGCTGTTTCCTTCAACACAAGATGAAGCTAGACGGGCAGAGTCGAGATCAAGGCAGTGA
AA sequence Show only first row Show all	>Potri.005G101200.1 pacid=42803619 polypeptide=Potri.005G101200.1.p locus=Potri.005G101200 ID=Potri.005G101200.1.v4.1 annot-version=v4.1 MYGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGASGFQPYGYGGGFQPPPFPVVRLRGLPFNCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAF VVFAGPMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPSRAKRFSDKDQMEYTEILKMRGLPFSAKKAEIIEFFKDFKL IDERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVELFPSTQDEARRAESRSRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66010			RNA-binding (RRM/RBD/RNP motif...		Potri.005G101200 [exp]	0	1
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	1.73	0.7237
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	8.48	0.6694
AT5G26610			D111/G-patch domain-containing...		Potri.005G002700 [exp]	21.33	0.6339
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.015G059000 [exp]	28.14	0.5841
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	29.39	0.6396	Pt-UBP27.1
AT1G33360			ATP-dependent Clp protease (.1...		Potri.013G089500 [exp]	30.16	0.6009
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Potri.011G089500 [exp]	37.73	0.6276
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.007G026900 [exp]	39.52	0.6061
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	40.84	0.6024
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Potri.007G028500 [exp]	50.28	0.6219

Compare expression of checked genes

Potri.005G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.