Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMGB915
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 112 / 2e-32 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 104 / 2e-29 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 92 / 2e-24 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT3G51880 91 / 6e-24 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT4G35570 77 / 6e-19 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 71 / 3e-16 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT5G23420 63 / 1e-12 HMGB6 high-mobility group box 6 (.1.2) AT4G23800 54 / 6e-09 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G11080 47 / 1e-06 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252600 [exp] 114 / 4e-33 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 113 / 9e-33 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 100 / 3e-27 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 92 / 4e-24 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 71 / 6e-16 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.004G131400 [exp] 58 / 3e-11 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.001G093700 [exp] 46 / 2e-06 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 46 / 2e-06 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.004G091800 [exp] 40 / 0.0002 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012252 [exp] 107 / 9e-31 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 107 / 3e-30 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 108 / 1e-28 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10030738 [exp] 102 / 5e-28 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 101 / 2e-27 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 100 / 3e-27 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 83 / 5e-20 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10013219 [exp] 78 / 5e-19 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016695 [exp] 77 / 5e-18 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035991 [exp] 74 / 1e-17 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [poplar] [flax] HMG-box PF00505 [poplar] [flax] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Potri.005G101400.2 pacid=42804690 polypeptide=Potri.005G101400.2.p locus=Potri.005G101400 ID=Potri.005G101400.2.v4.1 annot-version=v4.1 ATGAAAGGCGGTAGATCAAAGTCTGATTCCAGAAACAATGACGCCAAGCTAAAGAGAAAAGGAGCAGGAGCTGGAACCAAAGCGTCGAAGAAGGCCGCGA AGGATCCAAACAAGCCTAAAAGACCTGCTAGTGCTTTCTTCGTTTTCATGGAGGATTTTAGGAAGCAGTATAAGGAGTCTCATCCAAACAATAAATCTGT TGCTGCTGTTGGTAAAGCAGGTGGAGACAAGTGGAAATCCTTGAGTGAAGCTGAGAAAGCTCCTTATGCGGCTAAGGCCGAGAAGAGAAAGTTTGAATAC AATAAGGACATGGCTGCTTACAACAAAAGACTGGCTGGAGGAAATGATGATGAATCTGACAAGTCCAAGTCGGAAGTGAATGACGAAGATGAGGAAGATG AGAGTGACGGAGAGGAGGAAGATGACGACGAGTAA
AA sequence Show only first row Show all	>Potri.005G101400.2 pacid=42804690 polypeptide=Potri.005G101400.2.p locus=Potri.005G101400 ID=Potri.005G101400.2.v4.1 annot-version=v4.1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEY NKDMAAYNKRLAGGNDDESDKSKSEVNDEDEEDESDGEEEDDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	0	1	HMGB915
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	1.00	0.9313	HMGB901,Pt-HMGB3.2
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	1.41	0.9184
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	2.23	0.9058
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	2.44	0.9081
					Potri.006G044300 [exp]	4.00	0.8998
AT3G19910			RING/U-box superfamily protein...		Potri.005G090800 [exp]	4.24	0.8972
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	5.29	0.9061
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	7.14	0.8827
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	8.36	0.8958
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	9.48	0.8794	MPK3.1

Compare expression of checked genes

Potri.005G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.