Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35560 1036 / 0 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G05570 288 / 2e-81 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117800 [exp] 315 / 7e-91 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 284 / 5e-80 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069750 [exp] 207 / 2e-59 AT5G05570 377 / 4e-122 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 82 / 9e-16 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035989 [exp] 1128 / 0 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10037841 [exp] 259 / 1e-71 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 242 / 9e-66 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 86 / 9e-17 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001254 [exp] 45 / 5e-05 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002478 [exp] 44 / 6e-05 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF08596 [poplar] [flax] Lgl_C Lethal giant larvae(Lgl) like, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G101600.1 pacid=42805265 polypeptide=Potri.005G101600.1.p locus=Potri.005G101600 ID=Potri.005G101600.1.v4.1 annot-version=v4.1 ATGTTTGTCAAGAAGCTTGTGGAGAAGGCTTCAATAAAGAAGCCTGGAGGGGCTTCTGATGGCTTGAAACCCAGTGATGTAGAACCACGATTGGTATTCC ATTATGGGATACCACATGGAGCAACGAAGTTTGCATATGACACCATTCAAAAGATACTTGCCATCTCTACGCAAGATGGAAGAATCAAATTGTTTGGAAG AGATAACACTCAAGCTCTGCTTGAATCTCCTGAGGCAGTACCAAGCAAGTTTTTACAGTTCATTCAAAACAAAGGGATCCTTGTAAATGTAACATCCAAG AACCAAATTGAGGTTTGGGATTTAGACAGCAAAGTGTTGTCTAATGTACATGTATTTAAAGAAGACATCACCTCATTTACAGTTATGCAAAGTAATCTGT ACATTTACGTTGGAGATTATCTTGGTAATGTCAAGGTTTTGAAGCTTGATCAAGAATCATGTCACTTTGAACTAATGAAATACACCATACCCCTATCTGC TTCTCACGGGAGTCCAGCTGAAGTTTCTGGTGATACTGCTGTATTGCACACACTGCCCCAACCAGCTGCTGAAAGCAAGAGAGTTCTTATAGTATTTAGA GATGGCCTGCTTGCATTGTGGGATATTCGAGAGAGTAAATCCATCTTCACAACAGGTGGAGGTTTGCTGCAATCACAACATCACGAAATGAAGAAAGTAA CCTCTGCATGCTGGGCATGCCCTTTTGCAAGTAAAGTTGCTGTTGGGTACAGTAATGGAGAGATTTTTATCTGGAGCATCCCAGCTATCACAAATTCAAG AACCGAGTTAAACTTAGATAGGGCCACACAAAATGCTCCTATATTGAAACTTAATCTTGGATATAAGGTGGATAAGATTCCTATAGCATTATTGAAATGG CTTTATGCAGATGGGAAGGCAAGTCGACTCTATGTTATGGGTGCCTCTGACCTTGCATCTACAAACAATTTGCAGGTAGTCTTATTGAACGAGCATATTG AAACTCGCATGATCAAGTTGGGGCTTTATTTGCCTGAGCCCTGTATTGACATCGAGATCATTTCTAGCTCGTTTGATCAAAGCAAGCATAAACAGGATAT TCTTGTCCTGATTGGAAAATCAGGGCACATTTATGTCTACGATGATTGTTTGATTGAGAAGTATCTTCTACAATCCCAATCCAAAAGTTCACCCTCACTG CCAAAGGAGGTCATGGTGAAGATGCCATTTGCTGACTCAAGCATCACTGTGGCAAAGTTCATCACAAATACCCCAAATTTGTTGACTTATGGAGATGAGG ATTACATTCGGTTGGCTAAAAACATTCCATCACCTTTTCCTTTTGAGCCAAGACCCAAGGATGGCACTCATTCATTCCAGTTTAATGGATTTACAAAGGT TAAAAACCTGTACATAACTGGACACAGTGATGGAGCCATAAATTTTTGGGATGTGTCTTGTCCATTTCCCATCCCAATGCTATCACTTAAGCAACAGAGC GAAGATGATTTTTCTTTAAGTGGTATAGCACTGACAACATTGTATTTTCACACCGATTCCCGACTTCTTATCTCAGGGGATCAGAGTGGAATGGTTCGCA TCTTTAAATTTAAACCTGAGCCATATGCTGAGAACAGTTTTATGTCTTTCCAAGGAAGTTTGAAAAAGGGAAGCAATTACGTCCATAGTGTTAAACTTAT GAAAGTGAATGGTTCTGTGCTATCTATCAACATAAGCCCAAGCTTGGTACATCTTGCTGTTGGGTCTGATCAAGGATATGTTTCAGTTTTTGATATTGAA GGGCCAACACTACTATATCAAGAACACATTGCAAGTGAAATATCCACTGGCATCATCTCTCTGCAGTTTGATACCTGCTTTCTTCATGGATTTGAGAAAA ATATTTTAGTAGTGGCGACAAAGGATTCTTCAGTTTTGGCACTTGATGCTGACACTGGTAACTTGCTGAGTTCCAGTAGTGTTCATCCAAAGAAACCTTA TAGAGCTCTATTTATGCAGATTCTAGATGGGCAGGACATGTTAGCTAGAGGATCTAAAATGTCAAATAATCAAGACCCTAGTAAAAGAAAATCTGATGAG GATGGACCAAAGCAGTCTTCCCTGCTGATATGCTCTGAGAAAGCAGTGTATGTCTATTCATTAAATCATGTTGCTCAGGGTATCAAGAAGGTTCTTTACA AGAAGAAGTTCCAATCTTCTTCTTGTTGCTGGGCTTCAACATTCTGTGGTGCATCTGATGCTGGCCTTGCACTTCTTCTCTCAACTGGAAAAATTGAAAT AAGATCCCTGCCAGAGCTGTCGTTGATAAGAGAATCTTCAATCAGAGGTTTCACATATTCTGCACCAAAGCTGAACTCTTTCTCTGCCAGATCGATATGC TGTTCATGGGATGGGGAACTTATTATGATGAATGGTGATCAGGAAATGTTTATCGTGTCTGTGTTGTTTCAAAAGGAAAACTTCAGGCCTGTTGATTTTG TCAGTCAAGTCTACAGAAAAGAACTGATGTTTTCACAAGAAGGGCTTCCCACTGGATCTATCATCCAAAAGGAAAAGAAAAGGGGAATATTTAGTTCAGT AATGAAAGGAAGTAAGCCAAAGCAAGTTCCTGAGGTGGAAACTGAGGATACGAGAGAAAGTATTGAAGAACTCTCAAAAATCTTTTCAACTGTCAACTTT GAGTGTCATCATGATGAGAATAAAGATAGCATGGCTATGGATGATGATGGGATTGACTTGGACATAGATGACATCGATCTAGACGATCCTGTAGAGAAAA CCAAAGATCAGAACCTGTTGGCAGCTCTTAACAAGAAGAAATTGGCGAGCAAGTTTCAGGCTTTTACAGGTAGAATAAAACAGATGAATGTTAAGAATGA GAAAAATATCAAGGAAGAGGTAAAGGATGAGAAGACTGGTGCAGTCGATCAAATCAAGAAGAAATATGGCTTTTCTTTGTCTGGTGAATCAAGTGCTGCT AAAATAGCCCAAAACAAGTTGCATGAGAATATAAGAAAGTTGCAGGGAATCAATCTAAGAGCTACTGAAATGCAAGAAACAGCCAGTTCATTCTCTGCAA TGGCAAAAGAGGTCCTGCGAATTTCAGAAAAGGATAAACAAAGCTCATAA
AA sequence Show only first row Show all	>Potri.005G101600.1 pacid=42805265 polypeptide=Potri.005G101600.1.p locus=Potri.005G101600 ID=Potri.005G101600.1.v4.1 annot-version=v4.1 MFVKKLVEKASIKKPGGASDGLKPSDVEPRLVFHYGIPHGATKFAYDTIQKILAISTQDGRIKLFGRDNTQALLESPEAVPSKFLQFIQNKGILVNVTSK NQIEVWDLDSKVLSNVHVFKEDITSFTVMQSNLYIYVGDYLGNVKVLKLDQESCHFELMKYTIPLSASHGSPAEVSGDTAVLHTLPQPAAESKRVLIVFR DGLLALWDIRESKSIFTTGGGLLQSQHHEMKKVTSACWACPFASKVAVGYSNGEIFIWSIPAITNSRTELNLDRATQNAPILKLNLGYKVDKIPIALLKW LYADGKASRLYVMGASDLASTNNLQVVLLNEHIETRMIKLGLYLPEPCIDIEIISSSFDQSKHKQDILVLIGKSGHIYVYDDCLIEKYLLQSQSKSSPSL PKEVMVKMPFADSSITVAKFITNTPNLLTYGDEDYIRLAKNIPSPFPFEPRPKDGTHSFQFNGFTKVKNLYITGHSDGAINFWDVSCPFPIPMLSLKQQS EDDFSLSGIALTTLYFHTDSRLLISGDQSGMVRIFKFKPEPYAENSFMSFQGSLKKGSNYVHSVKLMKVNGSVLSINISPSLVHLAVGSDQGYVSVFDIE GPTLLYQEHIASEISTGIISLQFDTCFLHGFEKNILVVATKDSSVLALDADTGNLLSSSSVHPKKPYRALFMQILDGQDMLARGSKMSNNQDPSKRKSDE DGPKQSSLLICSEKAVYVYSLNHVAQGIKKVLYKKKFQSSSCCWASTFCGASDAGLALLLSTGKIEIRSLPELSLIRESSIRGFTYSAPKLNSFSARSIC CSWDGELIMMNGDQEMFIVSVLFQKENFRPVDFVSQVYRKELMFSQEGLPTGSIIQKEKKRGIFSSVMKGSKPKQVPEVETEDTRESIEELSKIFSTVNF ECHHDENKDSMAMDDDGIDLDIDDIDLDDPVEKTKDQNLLAALNKKKLASKFQAFTGRIKQMNVKNEKNIKEEVKDEKTGAVDQIKKKYGFSLSGESSAA KIAQNKLHENIRKLQGINLRATEMQETASSFSAMAKEVLRISEKDKQSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Potri.005G101600 [exp]	0	1
AT4G23720			Protein of unknown function (D...		Potri.003G135400 [exp]	3.00	0.6994
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	10.19	0.6941
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	11.18	0.6550
AT5G10080			Eukaryotic aspartyl protease f...		Potri.002G092100 [exp]	14.79	0.6748
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Potri.001G344600 [exp]	16.12	0.6630	PK7.1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	23.23	0.5887
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.004G074000 [exp]	25.23	0.6072	BETA-OHASE.2
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.003G215400 [exp]	33.70	0.6016
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Potri.016G089500 [exp]	41.32	0.5486	Pt-PIP2.2
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.001G384100 [exp]	45.46	0.5858

Compare expression of checked genes

Potri.005G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.