Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17550 525 / 2e-174 unknown protein AT3G53540 52 / 2e-06 unknown protein AT2G20240 45 / 0.0002 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095500 [exp] 53 / 8e-07 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 45 / 0.0002 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 45 / 0.0002 AT3G53540 433 / 1e-136 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035987 [exp] 298 / 2e-88 AT2G17550 345 / 3e-107 unknown protein Lus10016693 [exp] 293 / 9e-87 AT2G17550 357 / 1e-111 unknown protein Lus10040814 [exp] 50 / 9e-06 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378)
Representative CDS sequence Show only first row Show all	>Potri.005G101700.1 pacid=42803399 polypeptide=Potri.005G101700.1.p locus=Potri.005G101700 ID=Potri.005G101700.1.v4.1 annot-version=v4.1 ATGGGAGGATTTTTGCACCTTTTTGACTTTAATCAAGACAGCATGGCCAGGAAAATTCTTGCTCATAAGCGACATGTTGATGGACTGGAAGCTCCCCGGA ATAGCTTGGAGCTGCAAGTAGAATCTTCTCAGAGCTGCTGTGCTGCAGGAGATGCACAGTACTCTTATGAGGTCGAAGAAAACTGGTCTCAAAAGAATTG TTATCCAATTGAGGCTTCAATGAAGAGATTGATTAATGAGGAAATTTCCCAGCAATCAAGTGCAAAGAAAAATGCACCAAGCATTGTTGCCCGACTGATG GGGGTGGACATGTTGCCACTAGAAACGAAATCTGCAGTTCAGACGATTGATAACAAGAAAGCAATCACAGAAACCAAGATCTCAAAAAAGGAGAAGAATG AAAGAAGATCAGCTGCTCATCTCTCTTCCAACTCAAATACTTATAGGCGGATGGAACTTGATTCACTTTATGATGTTAAAGAGCAAGATGCTTATAGATG GAGTAAAGGCCAAAAGTTAGGGAAACCGAGCCCTCGAGAGCATCCTCAAGAGGAGGAACTACAAAATTTTAAAAAGGAATTTGAAGCATGGCAAACTGCT AGGTTTAAGGAATATTCTAAGGTAGTTGAACATGACAGCACTCCCGGTCAGTTACTTGTTCAAGAAAACATCAACAAGAAAAAAATGGCACTTGATGTAG ATTCCAGGATACCAGCAAGCGAGAGGCATGCAGAACCCAAGTGTCTTACATCAAAAGCAAGGTCACATGAAAGAAGTGGGTTACAACATCCTAGACATAA AGTGGAACTATTTCCAGATGAACAGGAGGATTTTTTTCCTGCAAGAAACAGAACTGTAAGTAGAAACACCGAGCACTCCTTGATAAATCATGATGAGAAA CTGGATAACTCTTCTGCTCACACACGGATAGTGATCTTGAAGCCTGGTCCTGATAGGATTTGTGACCACGATGAGTCCTGGACTAGTTCCTCAGGAACTT TTGAGGACAGAGGTAGCATTGAAGATTTCCTTGAGGAGGTAAAAGAACGGCTGAAATGTGAATTGCAAGGGAAAACTCAAAGAAGGAGTTCTGTGGTCAG AGGAAGTGGTATTGAAACCCCCTTTAGTGAAAGGCCATCAGATCCAAAACAAATTGCTCAGCATATAGCAAAGCAAGTCAGGGATAGTGTAACTCGGGAC CTTGGGATGAGTTTGCTCAGATCAGAATCAACAAGATCGTATAGAAGTGAAATTCAGTTTAATGAGCCAGGTTCTCCTGAGTTCATCAACAGAGATACTA GAAGATTCTTGTCAGAGAGATTGAGGAATGTTCTAAGGAGAGAGACACATCTAGATGATCCCATAGTTATCAGTGGCATTTCTGGATCATCTCTATTGGA AAATGAAAGGGCCAGACTAAAGCATGTGGGAGATTCATTGAAAGCTGGAAACGAGCCGAACTATTGGGAAATCATGAAAGATGAACAAGAAATGCAAACT AGATCATTCAGGCATGGGGATGAAAATGGAGCACCTCACCACAAATTATCTCCAAGGAACCTAATCAGGTCTTTGTCAGCTCCTGTGCCAGGAACATCTT TTGGGAAGCTTCTTCTTGAGGACCGACACATTTTAACCGGTGCCCATATCAGGAGGAAGCATGAATCCCTTGAAAATGTGACCTTGGAGTTGAAGAAACG GAAGAAAGAAAGATTTAACATAAAAGAAAAGGTTTCCAGTTTCAGATACAGCTTCTCTCTTAGGGGTAGGCTGTTTGGCAAGAAGATCCAATCAATGATG GAATCACATAATGCTGAACAGGAGCTTGTAAAGGATATCATGAACGGGCCAACAGTTATTAGGAACTTTGGCGAGAGAAACATAATGGAAAACTCGACTG AGGTGCCTCCAAGCCCTGCATCTGTGTGTAGTAGTGCTCAAGAAGAGTTCTGGAGGGCAACAGATTACCTCAGCCCAGCATCAACACCTGATATGACTAT GGGAGAAGATGATGCCATGCCACAAGTTTTTAAGGAGATCAATTCTAATCTGAATGAGCTGCGGCGGCAACTAAATCAACTTGGGTCCGTTAAACCTGAA GAGACAACAAATGAACATGAGAGCAACGAGTTCAAACTAGATGATCTAGAGGACAAAGCAGAAGCTTACGTAAGAGATTTGCTTATTGCTTCTGGTTTCT ATGATGGATCATCTGATAAACGTTTATTGAGATGGGACCCATTTGGAAAGCCTATCAGCAATTCAGTGTTTGAAGATGTTGAAAAATCTTGTAATAAATT GTTGGCCATGGATGATGGAGCTACCGCAACGCATCACAATGAGACGAAGGCAGATCACAGAATGTTATTTGATTTGTCGAATGAGGCGCTTTCAACTGTA CTTGGACCCCCTGTGACCATGTCTAGATTCAGAAGAAAGGTCATCGATTGGTCCATGCTGCCACATTTACACGGAAGGAAATTATTGGATTCTGTGTGGG AGATCATCCGTGAGAATTTATACCCTTTCAACGACAAATCCTTCTACTCTCTAGATAATATGGTGAGCAAGTATTTAGAATCCAGTCCTTGGTCTGGCTT GATAGATGACGAGGTAAATAATTTCGGAGGAGAGATAGAGTGTCTTATCATGGGAGATCTTATAGAGGAAACGTTGAAGGATTTATGCATGGATTAG
AA sequence Show only first row Show all	>Potri.005G101700.1 pacid=42803399 polypeptide=Potri.005G101700.1.p locus=Potri.005G101700 ID=Potri.005G101700.1.v4.1 annot-version=v4.1 MGGFLHLFDFNQDSMARKILAHKRHVDGLEAPRNSLELQVESSQSCCAAGDAQYSYEVEENWSQKNCYPIEASMKRLINEEISQQSSAKKNAPSIVARLM GVDMLPLETKSAVQTIDNKKAITETKISKKEKNERRSAAHLSSNSNTYRRMELDSLYDVKEQDAYRWSKGQKLGKPSPREHPQEEELQNFKKEFEAWQTA RFKEYSKVVEHDSTPGQLLVQENINKKKMALDVDSRIPASERHAEPKCLTSKARSHERSGLQHPRHKVELFPDEQEDFFPARNRTVSRNTEHSLINHDEK LDNSSAHTRIVILKPGPDRICDHDESWTSSSGTFEDRGSIEDFLEEVKERLKCELQGKTQRRSSVVRGSGIETPFSERPSDPKQIAQHIAKQVRDSVTRD LGMSLLRSESTRSYRSEIQFNEPGSPEFINRDTRRFLSERLRNVLRRETHLDDPIVISGISGSSLLENERARLKHVGDSLKAGNEPNYWEIMKDEQEMQT RSFRHGDENGAPHHKLSPRNLIRSLSAPVPGTSFGKLLLEDRHILTGAHIRRKHESLENVTLELKKRKKERFNIKEKVSSFRYSFSLRGRLFGKKIQSMM ESHNAEQELVKDIMNGPTVIRNFGERNIMENSTEVPPSPASVCSSAQEEFWRATDYLSPASTPDMTMGEDDAMPQVFKEINSNLNELRRQLNQLGSVKPE ETTNEHESNEFKLDDLEDKAEAYVRDLLIASGFYDGSSDKRLLRWDPFGKPISNSVFEDVEKSCNKLLAMDDGATATHHNETKADHRMLFDLSNEALSTV LGPPVTMSRFRRKVIDWSMLPHLHGRKLLDSVWEIIRENLYPFNDKSFYSLDNMVSKYLESSPWSGLIDDEVNNFGGEIECLIMGDLIEETLKDLCMD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17550			unknown protein		Potri.005G101700 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	5.74	0.7614
AT3G49810			ARM repeat superfamily protein...		Potri.002G116600 [exp]	7.61	0.7839
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	7.74	0.7667
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107600 [exp]	15.74	0.6712	Pt-OLP.6
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	17.14	0.7288
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	20.24	0.7202
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	22.04	0.6747
AT3G14470			NB-ARC domain-containing disea...		Potri.014G007600 [exp]	25.63	0.7230
AT3G14470			NB-ARC domain-containing disea...		Potri.017G128000 [exp]	29.08	0.7010
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	29.32	0.6932

Compare expression of checked genes

Potri.005G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.