Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35550 304 / 1e-104 HD HB-4, WOX13, ATWOX13 WUSCHEL related homeobox 13 (.1) AT1G20700 169 / 2e-52 HD ATWOX14, WOX14 WUSCHEL related homeobox 14 (.1) AT1G20710 135 / 3e-39 HD WOX13B, WOX10 WUSCHEL related homeobox 13B, WUSCHEL related homeobox 10 (.1) AT2G33880 72 / 2e-14 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) AT3G18010 71 / 6e-14 HD WOX1 WUSCHEL related homeobox 1 (.1) AT5G45980 70 / 9e-14 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G28610 67 / 6e-13 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT3G11260 63 / 5e-12 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G05770 61 / 8e-12 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT5G59340 63 / 2e-11 HD WOX2 WUSCHEL related homeobox 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G008800 [exp] 252 / 4e-85 AT4G35550 203 / 1e-65 WUSCHEL related homeobox 13 (.1) Potri.005G252800 [exp] 242 / 4e-81 AT4G35550 196 / 8e-63 WUSCHEL related homeobox 13 (.1) Potri.009G029200 [exp] 71 / 1e-14 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1) Potri.011G061400 [exp] 71 / 6e-14 AT2G33880 273 / 3e-89 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.012G047700 [exp] 69 / 3e-13 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.004G051600 [exp] 68 / 4e-13 AT2G33880 200 / 1e-60 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1) Potri.001G237900 [exp] 67 / 5e-13 AT5G59340 166 / 2e-50 WUSCHEL related homeobox 2 (.1) Potri.015G039100 [exp] 67 / 7e-13 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.002G124100 [exp] 65 / 1e-12 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040447 [exp] 218 / 4e-71 AT4G35550 203 / 4e-65 WUSCHEL related homeobox 13 (.1) Lus10023561 [exp] 216 / 1e-70 AT4G35550 201 / 3e-64 WUSCHEL related homeobox 13 (.1) Lus10016026 [exp] 172 / 4e-53 AT4G35550 149 / 4e-44 WUSCHEL related homeobox 13 (.1) Lus10012250 [exp] 174 / 3e-52 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10016569 [exp] 72 / 1e-14 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1) Lus10040840 [exp] 69 / 1e-13 AT5G59340 110 / 7e-29 WUSCHEL related homeobox 2 (.1) Lus10005282 [exp] 69 / 5e-13 AT5G45980 184 / 2e-54 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) Lus10018011 [exp] 68 / 7e-13 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028271 [exp] 66 / 8e-13 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10042007 [exp] 67 / 9e-13 AT3G18010 174 / 2e-50 WUSCHEL related homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.005G101800.1 pacid=42804678 polypeptide=Potri.005G101800.1.p locus=Potri.005G101800 ID=Potri.005G101800.1.v4.1 annot-version=v4.1 ATGGACTGGGACAACAATCAAGAAAATCACCAGGACAGTCATCAAAATCAAAGAGAGTGTAGAAATGGGATTAACGGGACTAATGTGAATGTGAATGGTA ATGGTGGAACTAATATGTTGTATGTGAAAGTTATGACAGATGAACAACTGGAAACTTTAAGGAAGCAAATTGCTGTTTATGCTGCTATTTGTGAACAGCT TGTTGAGATGCATAAAACCCTCTCTGCCCAGCAAGATCTTGCAGGAGGCAGGCTGGGGAATCTATACTGTGACCCATTGATGGCATCTGGGGGTCACAAA ATTACTGCCAGACAGCGGTGGACTCCAACACCTGTGCAGCTTCAAATTCTTGAGCGGATCTTTGATCAAGGAAATGGAACTCCAAGCAAGCAAAAGATTA AGGAGATAACATCTGAACTCAGTCAGCATGGACAAATTTCTGAGACAAACGTCTATAATTGGTTCCAAAATAGGCGTGCTCGATCAAAAAGAAAGCAGTT AGTTGCATCATCCAACAATGCTGAATCAGAAGTGGAGACAGAAGTTGATTCATTAAATGAAAAGAAGAAACCAGAAATATTTCACGCCCAACAGAATCCT CCTAGGGCTGAAGATCTGTGCTTCCAAAGCCCTGAGATAAGCTCTGAACTTCATTTCTTGGGGGATGACCACCTGACAGGAAAGATGGGAGTGCCAGGGA ACTATAATCTTTACGATCAAGCAGAGGACTATGGCATGGCAGGCTGA
AA sequence Show only first row Show all	>Potri.005G101800.1 pacid=42804678 polypeptide=Potri.005G101800.1.p locus=Potri.005G101800 ID=Potri.005G101800.1.v4.1 annot-version=v4.1 MDWDNNQENHQDSHQNQRECRNGINGTNVNVNGNGGTNMLYVKVMTDEQLETLRKQIAVYAAICEQLVEMHKTLSAQQDLAGGRLGNLYCDPLMASGGHK ITARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQLVASSNNAESEVETEVDSLNEKKKPEIFHAQQNP PRAEDLCFQSPEISSELHFLGDDHLTGKMGVPGNYNLYDQAEDYGMAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.005G101800 [exp]	0	1
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	2.44	0.8665
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	5.00	0.8564	PIN4,Pt-PIN6.2
AT5G02640			unknown protein		Potri.016G081600 [exp]	12.80	0.7987
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	15.19	0.8622
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	16.97	0.8605
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Potri.014G066400 [exp]	17.08	0.8648
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	25.47	0.8303
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.012G067800 [exp]	26.70	0.8124
AT3G06840			unknown protein		Potri.001G162100 [exp]	27.05	0.8462
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	29.74	0.8240	Pt-EXPA6.2

Compare expression of checked genes

Potri.005G101800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.