Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35520 764 / 0 MLH3, ATMLH3 MUTL protein homolog 3 (.1) AT4G02460 109 / 6e-24 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G09140 108 / 1e-23 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130800 [exp] 103 / 5e-22 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.019G078700 [exp] 100 / 5e-21 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016691 [exp] 479 / 2e-147 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 477 / 3e-146 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1) Lus10030376 [exp] 107 / 4e-23 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 100 / 3e-21 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10007866 [exp] 99 / 2e-20 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10034734 [exp] 98 / 2e-20 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01119 [poplar] [flax] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [poplar] [flax] PF08676 [poplar] [flax] MutL_C MutL C terminal dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.005G101900.2 pacid=42802914 polypeptide=Potri.005G101900.2.p locus=Potri.005G101900 ID=Potri.005G101900.2.v4.1 annot-version=v4.1 ATGGGTATAATTAAGCGATTGCCGGTGTCAGCACGCAGCACAATGCGTTCAGGGATCTTGGTGTTTGATTTAACAAGAGTTGTAGAGGAGCTTGTTTTTA ATAGCTTGGATGCTGGTGCTAAAAAGGTTTCGGTTTACGTGGCTGTTGGTACCTGCTATGTGAAAGTTTCTGATGATGGATGTGGGATTTCACGGGATGG ATTGGTGTTACTGGGAGAAAGATACGTGACCTCAAAGGTTCAACGTTTGGCTGATATGGATGTTGCTAGTGGAAACTTTGGCTTCCGGGGAGAAGCGTTG TCTTCTATCGCTGATGTCTCAGTGTTAGATGTATTGACAAAAGCTCGTGGAATGCCGAATGGATATCGCAAGGTCATGAAGGGATCTAAGTGTTTGTGTT TGGGAATTGATGATGATATTAAAGATGTCGGCACTACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGGAAATATATGCAATCCAGCCC TAAGAAGATACTGCACTTGGTAAAAAAATGTGCACTTCGTGTTGCTCTTATGCATTCAGAGGTGTCCTTTAAAGTTGTTGATATTGAAAGTGACGAGGAG CTTCTCTGCACAAATCCATCTTCTGCAATGTCACTGTTGATGAGTGGATTTGGAATTGAAGATTCCAGCTCTCTTCATGAACTGAATATCAGTGACAGTG TATTAAAGCTTTCTGGCTATATATCTGGTCCTTGCAGTAGTTTTTTCATCAAGGCTTTCCAATATGTTTATATCAATTCACGGTTTGTTTGCAAAGGCCC AATTCACAAATTGCTAAATCACCTGGCCTCTAGATTTGAGCATCCAGATCTGCAGAAGGCTAACAGTGTGTCTCAAAAAGGAAAGAAAAGCAGGCCTCAA CCATGTCCAGCTTATATTTTAAATTTGAGTTGCCCTTTCTCTCTCTATGATTTAACCTTTGAGCCATCAAAGACACATGCTGAATTCAAGGATTGGAACC CTATCCTTGCCTTCATTGAGAAGGTCATTCAACAACTCTGGAGGGAATGCACCGTTATTGGAGAATCCTCAACTCGGGCAACAGATACGTTCCAGAAAAA TGACATTTGGCAGGAAGGTAATGATATCACATCAGTGAAACAAGATTTTTTTGATGCAGATTTTTCTGGATTTGCAATAAAGAAAGGCGGGGTTAAAATT CACCAGTCTTCTCATCATCTCATTTCTTGCCCTTTGAAGATGCTAGACAAAGAGGTCGACCATCTTTTTCATGGGAAGCATGATAAAGTTCCTCAAGAAT TCTACTCAAATGTTTCAGAATTCAAAGAGGAACAAGTTGATAAGGAATTTGTTCTTCAGGGTGACTACTCTTCCCAAACATGGAATGGATCCATCTCTGG ATACATGCCAAGAGCAACCAAAACAGATGAGTGTCATCTCTTGACATCTGATAAGAATTTTTTATTGACAGATAATTGCTTCTTGGAAGATAGTTTCACT ACCAGGGAAAGACTCAGTGATCACATGCAGAGCCATTTCTCAAGCTCAGAATGGCAAAACGAGTCCCCAAAAATTGATTCCGTGGCAAGAAATAAATCTC TTGGGAGTGCATTCTCCTTTGATCATTATGGATTCAGAAACGAATTACCGTTTAGCAAGAGTAATATAAAACCCATTTTACAGAGTTGCTCCTCACAGAA AAGCCTGTCACTTGATAGGGATTTTTTTGCTGACAAGGAAGCATTTGAATTTCTTAATGATGGCTTCAAGAACAAAAGAAGACGGCTTTGGACAGCTGAA AATGTGGGTATCCCAAAAGGGGATACGATATTTGATATCTTTCCCTGTGCTTTACTGCAAGACAATGCATCGTGTACTCAGCAGTTGCCTGCAGATACTG ATGGAGCTGAGATGTCTGCAGCTTTTGATCTTCTGCCAGGTGCTTATGTAAATTCTTCTTCACCAAATGGAAAAATTTTAGCTAAAGGGAAAGGTCTTGC ATCTAATTCTATCCTACAATTAGAAATGTATGCCTCAGGAAATCATTCATCAATGTCTGATTGGTGTTCTGTAACTTCAAGTGCTTTTTTTCAAGCAAAA GTTTGGGATGCTGAACACTTTCCAGATGATAATGCAAGTGAGGGGAGCAAGGGATGGGGTAAAAAGGAAAATTGTTGGCATCTTCCTGATAGCTGGGAGA TTATGTCAAAGCCTTCCAGCCAAGATAACTTCTTCTCAAGTTGTACAAGCAGTGTGTTAGATTTTAAAAATTCAGCTGATTCTAGTAAAGATATCTGCAA ATTGCCTCAGTGGCAGGATCAAAATAATGAATTTTCTTTACAACATTCAGATATATCTGTTGGTGAGACAGACTGGCTCCTTTTGGACCCAGGTTCTAAA GATCCTAAAAGGAATGATGAGTGTGAAAGGCAAGAGAATCAACTAAGATATAAAGCTTGTGTACGAGATCGTGTTGCCAAAGAACGATATAGAAGAAGCA ATTCAACCCCACCATTTTACAGACTGAAGAGGAGGTTTATTTCCTTAAACAACCACTCAATGAGGAAAGAAGAAGAGCCATACACTCAGTTGTTCCATGA TTGGCTCACTTCTCCAGAAGCTAATGACTTTGAGCATCTACCTCTCCAGCCTAGTCATGTGGAGGAGGATTTAACACAAAGAACCAAATCCAATGGAAAG AACATGCCAGATACCATGCCGAACAAGGAGACTCCAGAAGGAAATCCAGAGCACTTCCAACACCCTAAGGCTTATGATTCTTCACCTGAAGCCTTTATGC CAAAGGACACCCAGGAGTCAATGGATTATAGGATCAAATGGCGGAATGGCTGCCAACAAATTGCAAATCACAACACGTCATCCAATGTTGGCAGTCAGCG AAATATACTTGACATCTCTTCGGGGTTCTTGCATCTTGCTGGAAATTTATTAGTTCCAGAATCTATTCATAAGAAGTGCCTTCAGGATGCCAGAGTCCTT CATCAGGTAGACAAGAAATTCATCCCAATTGTAGCTGGTGGGACACTTGCTGTTATAGACCAGCATGCAGCAGATGAAAGGATTCGACTGGAAGAACTTC GTCAAAAGGTATTATCTGGAGAAGAGAAGACAGTTACCTATCTTGATGCTGAACAAGAGCTGATACTTCCTGAAATAGGGTATCAGCTACTTCACAATTA TGCTGAACAAGTAAGAGAATGGGGATGGATCTGCAGTATTCAAGGTTCAGGGACCTTCAAGAAGAATTTGAATATTCTCCACCAGCAGCCAACTGTGATT ACACTTCTTGCAGTACCATGCATTTTAGGGGTCAATTTGTCTGATGGAGATCTCTTGGAATTTCTGCAGCAGCTTTCTGATACAGATGGCTCTTCAACTT TGCCGCCATCTGTTCTTCGTGTCCTCAATTATAAAGCATGCAGAGGCGCAATCATGTTCGGAGATTCGTTGCTACCATCAGAATGTTCACTTATTGTCGA AGAGCTAAAGCAGACCACACTTTGTTTTCAATGCGCCCACGGGCGACCAACAACTATTCCTGTTGTCAACCTGGAGGCGTTGCAAAAGCAGGTAGCAAAA CTTGGAGTGCTAAATGATGGTTCAAATGACTTGTGGCATGGATTACGCCGACAGGAACTCAGCCTTGAACGTGCAGCACAGCGTTTAAGTGCAGCTAGAG GCTAG
AA sequence Show only first row Show all	>Potri.005G101900.2 pacid=42802914 polypeptide=Potri.005G101900.2.p locus=Potri.005G101900 ID=Potri.005G101900.2.v4.1 annot-version=v4.1 MGIIKRLPVSARSTMRSGILVFDLTRVVEELVFNSLDAGAKKVSVYVAVGTCYVKVSDDGCGISRDGLVLLGERYVTSKVQRLADMDVASGNFGFRGEAL SSIADVSVLDVLTKARGMPNGYRKVMKGSKCLCLGIDDDIKDVGTTVVVRDLFYNQPVRRKYMQSSPKKILHLVKKCALRVALMHSEVSFKVVDIESDEE LLCTNPSSAMSLLMSGFGIEDSSSLHELNISDSVLKLSGYISGPCSSFFIKAFQYVYINSRFVCKGPIHKLLNHLASRFEHPDLQKANSVSQKGKKSRPQ PCPAYILNLSCPFSLYDLTFEPSKTHAEFKDWNPILAFIEKVIQQLWRECTVIGESSTRATDTFQKNDIWQEGNDITSVKQDFFDADFSGFAIKKGGVKI HQSSHHLISCPLKMLDKEVDHLFHGKHDKVPQEFYSNVSEFKEEQVDKEFVLQGDYSSQTWNGSISGYMPRATKTDECHLLTSDKNFLLTDNCFLEDSFT TRERLSDHMQSHFSSSEWQNESPKIDSVARNKSLGSAFSFDHYGFRNELPFSKSNIKPILQSCSSQKSLSLDRDFFADKEAFEFLNDGFKNKRRRLWTAE NVGIPKGDTIFDIFPCALLQDNASCTQQLPADTDGAEMSAAFDLLPGAYVNSSSPNGKILAKGKGLASNSILQLEMYASGNHSSMSDWCSVTSSAFFQAK VWDAEHFPDDNASEGSKGWGKKENCWHLPDSWEIMSKPSSQDNFFSSCTSSVLDFKNSADSSKDICKLPQWQDQNNEFSLQHSDISVGETDWLLLDPGSK DPKRNDECERQENQLRYKACVRDRVAKERYRRSNSTPPFYRLKRRFISLNNHSMRKEEEPYTQLFHDWLTSPEANDFEHLPLQPSHVEEDLTQRTKSNGK NMPDTMPNKETPEGNPEHFQHPKAYDSSPEAFMPKDTQESMDYRIKWRNGCQQIANHNTSSNVGSQRNILDISSGFLHLAGNLLVPESIHKKCLQDARVL HQVDKKFIPIVAGGTLAVIDQHAADERIRLEELRQKVLSGEEKTVTYLDAEQELILPEIGYQLLHNYAEQVREWGWICSIQGSGTFKKNLNILHQQPTVI TLLAVPCILGVNLSDGDLLEFLQQLSDTDGSSTLPPSVLRVLNYKACRGAIMFGDSLLPSECSLIVEELKQTTLCFQCAHGRPTTIPVVNLEALQKQVAK LGVLNDGSNDLWHGLRRQELSLERAAQRLSAARG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	0	1
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	2.44	0.8774
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	2.44	0.8959
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	5.47	0.8905
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	6.16	0.8573
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	7.07	0.8542
AT3G50430			unknown protein		Potri.005G133500 [exp]	7.74	0.8569
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.010G100900 [exp]	8.24	0.8787	NHX8.2
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G121700 [exp]	8.94	0.8620
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	10.81	0.8696
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	14.69	0.8582

Compare expression of checked genes

Potri.005G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.