Plant FIBer expression Database

Potri.005G102000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35510 58 / 3e-09 unknown protein
AT2G17540 42 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G063000
[exp]
324 / 1e-108 AT4G35510 66 / 7e-12 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035988
[exp]
69 / 6e-13 AT4G35510 107 / 1e-26 unknown protein
Lus10016694
[exp]
69 / 7e-13 AT4G35510 108 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G102000.1 pacid=42805431 polypeptide=Potri.005G102000.1.p locus=Potri.005G102000 ID=Potri.005G102000.1.v4.1 annot-version=v4.1
ATGGAGGCTAACATATGTGACATCAGTCACTTGGATGCTGATGTCCTTTTGCCTCCTCGAAAGCGCCTGCTTGCTGGATTCAAGAAACAGAGTTCTGATG
GTGATGGTGCTTCACGTCCTCCTATAGTTGCGTCCTCTTCATCTTCAGCATCTCCTCCTTCTCCATCTCCTTCTCCAACACCTCGTTCTCCTTCTTCGAA
TGAATTTCAGACACAACTTAACATTCTGTTGAGTTCCCATTTTAATAGTAGTCACAACCTTTCAACTGAGCAGATTGTAGAGGCCTCAAAGTCAGCAGCT
GAGGCTGCTGTTAAGGCTGCAGAGGCTGCAAGAGCAGCAGCTCAGGAAAAGGCTATTATTGCAGCAAAAGCAGTGTCTGCTGCCAGGAGTGCTTTAGCCT
TGGTTGCATCATTTCCTGAAGAGACAGCTAGCAAGGATAAATTCCTGAAAAAGAATAAGTTGAAGAAGCATGTTCAAGTTCAGCTCTTGTACAAAAAGCA
CCAACCAGTTGAGAATTTTAGGGATGATGAAAAATTAGCTCGTAAGTTGCATCGAGTTATGAATAGCTCCCCAAGAATTTCAAAGAATTCTTCCAGTTCT
GACTTGAAAGGTGGCCATAGAAATAAGAAGCCTAAAAGCTCACCAAGTTCTGAAAGAACTAGGGTTTCAAATGGAAGTACAATGTTTGGAGAGAACCTGC
CTTCGTCTTGCAATGGGCATGCCATAGCAGGTGAGTTGGATTCTGATGAATCCATCCAGGAGGCGCACACAAGTATCCCAGATGAAAAGGCATTGAAATA
TGAAAAAACTGGCCAATTAGACATAGATAACTGGGAAGCAGAGTCAAGTCATTTGAAAGAGAAAAACCGGGGTGATTCAGGTTCCCCTAGTAAAAAGAGG
GGAAGACTGAAACTGAAGAAGTTGCCGTTAAGCATTTGTAACTCTAAGGATCAATCAAACCCCAAGGAAGGTAGTCTTCCTAAAATCCTCCCATTGACTG
ATAAGACCATGGGCAATCCTACTACTCGTAGCAAGCCTTTGTTTCCAATGGAGCCTTCCTCTGGTACTCTGGTGCAAATTGAGGCTACATCAATTTGGAA
ATGCCAGGAGTTCAAAGCACCCGCATGCATCAAACAGAATAAAGTCGTTCAGTCATAA
AA sequence
>Potri.005G102000.1 pacid=42805431 polypeptide=Potri.005G102000.1.p locus=Potri.005G102000 ID=Potri.005G102000.1.v4.1 annot-version=v4.1
MEANICDISHLDADVLLPPRKRLLAGFKKQSSDGDGASRPPIVASSSSSASPPSPSPSPTPRSPSSNEFQTQLNILLSSHFNSSHNLSTEQIVEASKSAA
EAAVKAAEAARAAAQEKAIIAAKAVSAARSALALVASFPEETASKDKFLKKNKLKKHVQVQLLYKKHQPVENFRDDEKLARKLHRVMNSSPRISKNSSSS
DLKGGHRNKKPKSSPSSERTRVSNGSTMFGENLPSSCNGHAIAGELDSDESIQEAHTSIPDEKALKYEKTGQLDIDNWEAESSHLKEKNRGDSGSPSKKR
GRLKLKKLPLSICNSKDQSNPKEGSLPKILPLTDKTMGNPTTRSKPLFPMEPSSGTLVQIEATSIWKCQEFKAPACIKQNKVVQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35510 unknown protein Potri.005G102000
[exp]
0 1
AT4G35510 unknown protein Potri.007G063000
[exp]
1.00 0.8410
AT5G42150 Glutathione S-transferase fami... Potri.012G046600
[exp]
2.44 0.7842
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Potri.012G058200
[exp]
5.65 0.7993 Pt-DR1.2
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Potri.005G231300
[exp]
9.53 0.7620 Pt-GBF5.1
AT3G14080 Small nuclear ribonucleoprotei... Potri.003G068400
[exp]
9.79 0.7064
AT1G23040 hydroxyproline-rich glycoprote... Potri.010G113300
[exp]
16.73 0.7021
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Potri.008G054700
[exp]
18.97 0.7464 Pt-HSP70.6
AT3G13200 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 /... Potri.001G370366
[exp]
21.44 0.7713
AT4G18700 ATWL4, CIPK12, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.011G067600
[exp]
23.66 0.6898
AT5G05380 PRA1.B3 prenylated RAB acceptor 1.B3 (... Potri.019G124100
[exp]
30.29 0.7178

Potri.005G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.